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@mackelab

mackelab

Machine Learning in Science at University of Tübingen, Germany

Machine Learning in Science

Our goal is to accelerate scientific discovery using machine learning and artificial intelligence: We develop computational methods that help scientists interpret empirical data and use them to gain scientific insights.

We closely collaborate with experimental researchers from various disciplines. We are particularly interested in applications in the neurosciences: We build data-driven mechanistic models of neuronal functions in order to understand how neuronal networks in the brain process sensory information and control intelligent behaviour.

We are part of the Excellence Cluster Machine Learning Tübingen and the Tübingen AI Center. You can find out more about us on our lab website.

In addition to the repositories in this organization, (former) lab members have also developed the following toolboxes:

  • sbi, a toolbox for simulation-based inference,
  • DECODE, a deep learning tool for single molecule localization microscopy,
  • sbibm, a benchmark for simulation-based inference,
  • flyvis, a connectome constrained deep mechanistic network (DMN) model,
  • Jaxley, a differentiable simulator for biophysical neuron models.

Pinned Loading

  1. mnle-for-ddms mnle-for-ddms Public

    Research code for Mixed Neural Likelihood Estimation (MNLE, Boelts et al. 2022)

    Jupyter Notebook 17 5

  2. phase-limit-cycle-RNNs phase-limit-cycle-RNNs Public

    Code for "Trained recurrent neural networks develop phase-locked limit cycles in a working memory task" - Matthijs Pals (@matthijspals) , Jakob Macke and Omri Barak.

    Python 5 3

  3. neural_timeseries_diffusion neural_timeseries_diffusion Public

    This repository contains research code for the paper "Generating realistic neurophysiological time series with denoising diffusion probabilistic models".

    Python 64 6

  4. sbi-ice sbi-ice Public

    Simulation-Based Inference of Surface Accumulation and Basal Melt Rates of an Antarctic Ice Shelf from Isochronal Layers

    Python 1

  5. STG_energy STG_energy Public

    Repo for STG energy paper. Michael (@michaeldeistler) and Pedro (@ppjgoncalves).

    Jupyter Notebook 1

  6. labproject labproject Public

    Labproject about comparing distributions metrics by @mackelab

    Python 3

Repositories

Showing 10 of 81 repositories
  • neuralgbi_diffusion Public Forked from mackelab/neuralgbi

    Richard @rdgao & Michael @michaeldeistler: using neural network-based regression and density estimation for Generalized Bayesian Inference

    mackelab/neuralgbi_diffusion’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Nov 5, 2024
  • sourcerer-sequential Public Forked from mackelab/sourcerer

    A sequential variant of the "Sourcerer: Sample-based Maximum Entropy Source Distribution Estimation" algorithm @swag2198

    mackelab/sourcerer-sequential’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Nov 3, 2024
  • markovsbi Public

    Public repository for paper: Compositional simulation-based inference for time series.

    mackelab/markovsbi’s past year of commit activity
    1 0 0 0 Updated Oct 28, 2024
  • sequence-memory Public

    Code for Liebe et al. "Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks", code by Matthijs Pals (@Matthijspals)

    mackelab/sequence-memory’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Oct 7, 2024
  • epiphyte Public

    Python toolkit for working with high-dimensional neural data recorded during naturalistic, continuous stimuli @a-darcher @rachrapp

    mackelab/epiphyte’s past year of commit activity
    Jupyter Notebook 7 GPL-3.0 1 0 0 Updated Sep 13, 2024
  • automind Public

    Automated Model Inference from Neural Dynamics

    mackelab/automind’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 1 0 0 Updated Sep 9, 2024
  • neural_timeseries_diffusion Public

    This repository contains research code for the paper "Generating realistic neurophysiological time series with denoising diffusion probabilistic models".

    mackelab/neural_timeseries_diffusion’s past year of commit activity
    Python 64 MIT 6 1 0 Updated Aug 30, 2024
  • sourcerer Public

    Code for the preprint "Sourcerer: Sample-based Maximum Entropy Source Distribution Estimation"

    mackelab/sourcerer’s past year of commit activity
    Python 1 MIT 3 0 0 Updated Aug 28, 2024
  • .github Public

    Repo for mackelab github landing page, maintained by @michaeldeistler

    mackelab/.github’s past year of commit activity
    0 0 0 0 Updated Aug 20, 2024
  • jaxley_experiments Public

    Repository to reproduce results of `Differentiable simulation enables large-scale training of biophysical models of neural dynamics`.

    mackelab/jaxley_experiments’s past year of commit activity
    Jupyter Notebook 0 MIT 1 1 0 Updated Aug 20, 2024

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