deploy: f063ad2

malariagen · Nov 18, 2024 · 3f6c323 · 3f6c323
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: ff23444c47cd5a3064bc63507ec21b52
+config: 59e7d19ae29c5a46205834932d5afbf9
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_sources/af1/af1.0.ipynb b/_sources/af1/af1.0.ipynb
@@ -577,7 +577,7 @@
     "\n",
     "Raw sequence reads, sequence read alignments and SNP calls are available for download from the European Nucleotide Archive (ENA). Further information on how to find and download these data is provided in the [data download guide](https://malariagen.github.io/vector-data/af1/download.html).\n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](https://malariagen.github.io/vector-data/af1/cloud.html)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](https://malariagen.github.io/vector-data/af1/cloud.html)."
    ]
   },
   {

diff --git a/_sources/af1/af1.1.ipynb b/_sources/af1/af1.1.ipynb
@@ -81,7 +81,7 @@
     "\n",
     "Data from `Af1.1` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/af1/af1.2.ipynb b/_sources/af1/af1.2.ipynb
@@ -70,7 +70,7 @@
     "\n",
     "Data from `Af1.2` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/af1/af1.3.ipynb b/_sources/af1/af1.3.ipynb
@@ -66,7 +66,7 @@
     "\n",
     "Data from `Af1.3` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/af1/af1.4.ipynb b/_sources/af1/af1.4.ipynb
@@ -70,7 +70,7 @@
     "\n",
     "Data from `Af1.4` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.0.ipynb b/_sources/ag3/ag3.0.ipynb
@@ -81,7 +81,7 @@
     "\n",
     "Raw sequence reads, sequence read alignments and SNP calls are available for download from the European Nucleotide Archive (ENA). Further information on how to find and download these data is provided in the [data download guide](download).\n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.1.ipynb b/_sources/ag3/ag3.1.ipynb
@@ -70,7 +70,7 @@
     "\n",
     "Data from `Ag3.1` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.10.ipynb b/_sources/ag3/ag3.10.ipynb
@@ -74,7 +74,7 @@
     "\n",
     "Data from `Ag3.10` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {
@@ -1036,9 +1036,9 @@
    "provenance": []
   },
   "kernelspec": {
-   "display_name": "developer-developer-training-nb-maintenance-mgen-9.0.0",
+   "display_name": "global-global-mgenv-6.0.5",
    "language": "python",
-   "name": "conda-env-developer-developer-training-nb-maintenance-mgen-9.0.0-py"
+   "name": "conda-env-global-global-mgenv-6.0.5-py"
   },
   "language_info": {
    "codemirror_mode": {
@@ -1050,7 +1050,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.12.6"
   }
  },
  "nbformat": 4,

diff --git a/_sources/ag3/ag3.11.ipynb b/_sources/ag3/ag3.11.ipynb
@@ -70,7 +70,7 @@
     "\n",
     "Data from `Ag3.11` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {
@@ -720,9 +720,9 @@
    "provenance": []
   },
   "kernelspec": {
-   "display_name": "ahernank-ahernank-pug-dev",
+   "display_name": "global-global-mgenv-6.0.5",
    "language": "python",
-   "name": "conda-env-ahernank-ahernank-pug-dev-py"
+   "name": "conda-env-global-global-mgenv-6.0.5-py"
   },
   "language_info": {
    "codemirror_mode": {
@@ -734,7 +734,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.5"
+   "version": "3.12.6"
   }
  },
  "nbformat": 4,

diff --git a/_sources/ag3/ag3.12.ipynb b/_sources/ag3/ag3.12.ipynb
@@ -69,7 +69,7 @@
     "\n",
     "Data from `Ag3.12` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.13.ipynb b/_sources/ag3/ag3.13.ipynb
@@ -69,7 +69,7 @@
     "\n",
     "Data from `Ag3.13` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.2.ipynb b/_sources/ag3/ag3.2.ipynb
@@ -80,7 +80,7 @@
     "\n",
     "Data from `Ag3.2` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.3.ipynb b/_sources/ag3/ag3.3.ipynb
@@ -73,7 +73,7 @@
     "\n",
     "Data from `Ag3.3` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.4.ipynb b/_sources/ag3/ag3.4.ipynb
@@ -70,7 +70,7 @@
     "\n",
     "Data from `Ag3.4` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.5.ipynb b/_sources/ag3/ag3.5.ipynb
@@ -71,7 +71,7 @@
     "\n",
     "Data from `Ag3.5` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.6.ipynb b/_sources/ag3/ag3.6.ipynb
@@ -72,7 +72,7 @@
     "\n",
     "Data from `Ag3.6` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.7.ipynb b/_sources/ag3/ag3.7.ipynb
@@ -75,7 +75,7 @@
     "\n",
     "Data from `Ag3.7` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.8.ipynb b/_sources/ag3/ag3.8.ipynb
@@ -75,7 +75,7 @@
     "\n",
     "Data from `Ag3.8` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {

diff --git a/_sources/ag3/ag3.9.ipynb b/_sources/ag3/ag3.9.ipynb
@@ -79,7 +79,7 @@
     "\n",
     "Data from `Ag3.9` are hosted by several different services. \n",
     "\n",
-    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
+    "The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
    ]
   },
   {
@@ -1507,9 +1507,9 @@
    "provenance": []
   },
   "kernelspec": {
-   "display_name": "developer-developer-training-nb-maintenance-mgen-8.7.0",
+   "display_name": "global-global-mgenv-6.0.5",
    "language": "python",
-   "name": "conda-env-developer-developer-training-nb-maintenance-mgen-8.7.0-py"
+   "name": "conda-env-global-global-mgenv-6.0.5-py"
   },
   "language_info": {
    "codemirror_mode": {
@@ -1521,7 +1521,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.12.6"
   }
  },
  "nbformat": 4,