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malariagen · Apr 18, 2024 · 737fea8 · 737fea8
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diff --git a/_sources/vobs/vobs-data-access.ipynb b/_sources/vobs/vobs-data-access.ipynb
@@ -17,35 +17,39 @@
     "\n",
     "To access data from the Vector Observatory, you will need to follow these steps:\n",
     "\n",
-    "### Step 1. Make sure you have a Google Account\n",
+    "#### Step 1. Make sure you have a Google Account\n",
     "\n",
     "To allow us to configure data access permissions, you will need to provide us with an email address that is associated with a Google account. This could be a standard Google (i.e., GMail) account, or alternatively it could be your work email if your employer uses Google Workspace.\n",
     "\n",
-    "### Step 2. Fill out the data access request form\n",
+    "#### Step 2. Fill out the data access request form\n",
     "\n",
     "Please fill out and submit the following form:\n",
     "\n",
-    "https://forms.gle/kCqistorZyxaU4LP7 \n",
+    "> [MalariaGEN cloud data access form](https://forms.gle/kCqistorZyxaU4LP7)\n",
     "\n",
     "All requests for data access will be granted, subject to verification checks and agreement to reasonable use. This is to ensure that the data resources remain accessible to everyone. Submitting this form will allow us to configure storage permissions and monitor storage for excessive network usage in future.\n",
     "\n",
-    "### Step 3. Ensure you are using the latest version of the `malariagen_data` Python package\n",
+    "#### Step 3. Ensure you are using the latest version of the `malariagen_data` Python package\n",
     "\n",
     "If you access data via the `malariagen_data` Python package, please upgrade to version 9.0 or higher. These versions will automatically use your authentication credentials when accessing data in Google Cloud.\n",
     "\n",
-    "### Step 4. Set up Google Cloud authentication credentials\n",
+    "#### Step 4. Set up Google Cloud authentication credentials\n",
     "\n",
-    "If you are only accessing data via the malariagen_data Python package from within Google Colab, you can skip this step, because authentication credentials will be obtained automatically.\n",
+    "If you are only accessing data via the `malariagen_data` Python package from within Google Colab, you can skip this step, because authentication credentials will be obtained automatically.\n",
     "\n",
     "If you are accessing data from any other location, you will need to authenticate with Google Cloud. To do this, you will need to:\n",
     "\n",
     "1. Install the [Google Cloud CLI](https://cloud.google.com/sdk/gcloud). See the details in the Google Documentation [here](https://cloud.google.com/sdk/docs/install-sdk).\n",
     "\n",
-    "2. Check gcloud is installed correctly:\n",
+    "\n",
+    "2. Check `gcloud` is installed correctly:\n",
     "\n",
     "```bash\n",
     "gcloud help\n",
     "```\n",
+    "\n",
+    "3. Authenticate using `gcloud`: \n",
+    "\n",
     "- If you need to authenticate within the `malariagen_data` package, you will need to use the following command:\n",
     "\n",
     "```bash\n",
@@ -56,18 +60,16 @@
     "\n",
     "```bash\n",
     "gcloud auth login\n",
-    "```\n",
-    "\n",
-    "If you have any questions, please contact us at: support@malariagen.net"
+    "```"
    ]
   },
   {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "ade225aa-7bd3-44e6-95a6-17e81cb53557",
+   "cell_type": "markdown",
+   "id": "ed024cac-be61-44a0-a339-821a9f70a456",
    "metadata": {},
-   "outputs": [],
-   "source": []
+   "source": [
+    "If you have any questions, please contact us at: <support@malariagen.net>"
+   ]
   }
  ],
  "metadata": {

diff --git a/searchindex.js b/searchindex.js
diff --git a/vobs/vobs-data-access.html b/vobs/vobs-data-access.html
@@ -618,7 +618,9 @@ <h2>Step 1. Make sure you have a Google Account<a class="headerlink" href="#step
 <section id="step-2-fill-out-the-data-access-request-form">
 <h2>Step 2. Fill out the data access request form<a class="headerlink" href="#step-2-fill-out-the-data-access-request-form" title="Permalink to this headline">#</a></h2>
 <p>Please fill out and submit the following form:</p>
-<p>https://forms.gle/kCqistorZyxaU4LP7</p>
+<blockquote>
+<div><p><a class="reference external" href="https://forms.gle/kCqistorZyxaU4LP7">MalariaGEN cloud data access form</a></p>
+</div></blockquote>
 <p>All requests for data access will be granted, subject to verification checks and agreement to reasonable use. This is to ensure that the data resources remain accessible to everyone. Submitting this form will allow us to configure storage permissions and monitor storage for excessive network usage in future.</p>
 </section>
 <section id="step-3-ensure-you-are-using-the-latest-version-of-the-malariagen-data-python-package">
@@ -627,15 +629,18 @@ <h2>Step 3. Ensure you are using the latest version of the <code class="docutils
 </section>
 <section id="step-4-set-up-google-cloud-authentication-credentials">
 <h2>Step 4. Set up Google Cloud authentication credentials<a class="headerlink" href="#step-4-set-up-google-cloud-authentication-credentials" title="Permalink to this headline">#</a></h2>
-<p>If you are only accessing data via the malariagen_data Python package from within Google Colab, you can skip this step, because authentication credentials will be obtained automatically.</p>
+<p>If you are only accessing data via the <code class="docutils literal notranslate"><span class="pre">malariagen_data</span></code> Python package from within Google Colab, you can skip this step, because authentication credentials will be obtained automatically.</p>
 <p>If you are accessing data from any other location, you will need to authenticate with Google Cloud. To do this, you will need to:</p>
 <ol class="simple">
 <li><p>Install the <a class="reference external" href="https://cloud.google.com/sdk/gcloud">Google Cloud CLI</a>. See the details in the Google Documentation <a class="reference external" href="https://cloud.google.com/sdk/docs/install-sdk">here</a>.</p></li>
-<li><p>Check gcloud is installed correctly:</p></li>
+<li><p>Check <code class="docutils literal notranslate"><span class="pre">gcloud</span></code> is installed correctly:</p></li>
 </ol>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gcloud<span class="w"> </span><span class="nb">help</span>
 </pre></div>
 </div>
+<ol class="simple">
+<li><p>Authenticate using <code class="docutils literal notranslate"><span class="pre">gcloud</span></code>:</p></li>
+</ol>
 <ul class="simple">
 <li><p>If you need to authenticate within the <code class="docutils literal notranslate"><span class="pre">malariagen_data</span></code> package, you will need to use the following command:</p></li>
 </ul>
@@ -648,7 +653,7 @@ <h2>Step 4. Set up Google Cloud authentication credentials<a class="headerlink"
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gcloud<span class="w"> </span>auth<span class="w"> </span>login
 </pre></div>
 </div>
-<p>If you have any questions, please contact us at: support&#64;malariagen.net</p>
+<p>If you have any questions, please contact us at: <a class="reference external" href="mailto:support&#37;&#52;&#48;malariagen&#46;net">mailto:support<span>&#64;</span>malariagen<span>&#46;</span>net</a></p>
 </section>
 </section>