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Af1.0, Af1.2, Af1.3, Af1.4 - update VUG description #89

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Nov 9, 2024
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Af1.0, Af1.2, Af1.3, Af1.4 - update VUG description #89

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5a1728e
Modified the first part of the notebook to mention CNVs and haplotypes.
jonbrenas Nov 6, 2024
ba74c09
Copy-pasted the wrong number of samples
jonbrenas Nov 6, 2024
6c6e4a7
I had not realized that updating 1.2, 1.3 and 1.4 was part of the sam…
jonbrenas Nov 6, 2024
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7 changes: 6 additions & 1 deletion docs/af1/af1.0.ipynb
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"\n",
"The `Af1.0` release provides a first baseline understanding of Anopheles funestus genetic diversity and population structure across Africa using 656 whole genome sequenced individuals. Over the coming years, the [MalariaGEN Vector Observatory Anopheles funestus Genomic Surveillance Project](https://www.malariagen.net/project/anopheles-funestus-genomic-surveillance-project/) will continue to carry out further spatiotemporal sampling of _Anopheles funestus_ that builds upon Phase 1.\n",
"\n",
"This page provides an introduction to open data resources released as part of the first phase of the Anopheles funestus Genomic Surveillance Project project, known as `Af1.0` for short. We hope the data from `Af1.0` will be a valuable resource for research and surveillance of malaria vectors. \n",
"\n",
"This page provides an introduction to open data resources released as part of the first phase of the Anopheles funestus Genomic Surveillance Project project, known as `Af1.0` for short. We hope the data from `Af1.0` will be a valuable resource for research and surveillance of malaria vectors. If you have any questions about this guide or how to use the data, please [start a new discussion](https://github.com/malariagen/vector-public-data/discussions/new) on the malariagen/vector-open-data repo on GitHub. If you find any bugs, please [raise an issue](https://github.com/malariagen/vector-public-data/issues/new/choose)."
"The **[Af1.0](af1.0): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 656 mosquitoes.\n",
"\n",
"More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/af10-anopheles-funestus-data-resource/). \n",
"\n",
"If you have any questions about this guide or how to use the data, please [start a new discussion](https://github.com/malariagen/vector-public-data/discussions/new) on the malariagen/vector-open-data repo on GitHub. If you find any bugs, please [raise an issue](https://github.com/malariagen/vector-public-data/issues/new/choose)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/af1/af1.2.ipynb
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"source": [
"# Af1.2\n",
"\n",
"The **[Af1.2](af1.2): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls and SNP haplotypes from whole-genome sequencing of 317 mosquitoes.\n",
"The **[Af1.2](af1.2): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 317 mosquitoes.\n",
"\n",
"More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/af12-anopheles-funestus-data-resource/). \n",
"\n",
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2 changes: 1 addition & 1 deletion docs/af1/af1.3.ipynb
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"source": [
"# Af1.3\n",
"\n",
"The **[Af1.3](af1.3): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls and SNP haplotypes from whole-genome sequencing of 193 mosquitoes.\n",
"The **[Af1.3](af1.3): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 193 mosquitoes.\n",
"\n",
"More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/af13-anopheles-funestus-data-resource/). \n",
"\n",
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2 changes: 1 addition & 1 deletion docs/af1/af1.4.ipynb
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"source": [
"# Af1.4\n",
"\n",
"The **[Af1.4](af1.4): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls and SNP haplotypes from whole-genome sequencing of 733 mosquitoes.\n",
"The **[Af1.4](af1.4): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 733 mosquitoes.\n",
"\n",
"More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/af14-anopheles-funestus-data-resource/). \n",
"\n",
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