Installation

RagTag Version: v2.1.0

Dependencies

Minimap2, Unimap, or Nucmer
Python 3 (with the following auto-installed packages)
- numpy (developed and tested on 1.18.0)
- intervaltree (3.1.0)
- pysam (0.16.0.1)
- networkx (2.5)

One can install RagTag from:

conda install -c bioconda ragtag

pip install RagTag

git clone https://github.com/malonge/RagTag
cd RagTag
python3 setup.py install

Are these docs confusing or incomplete? Please open an issue and let me know.