Docker container (#45) #30

	name: Python tests
	on: [push, pull_request]
	jobs:
	test:
	runs-on: ubuntu-20.04
	steps:
	- name: checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0
	- name: Install Python
	uses: actions/setup-python@v1
	with:
	python-version: 3.9
	- name: Install Poetry
	uses: snok/install-poetry@v1
	with:
	virtualenvs-create: false
	installer-parallel: true
	version: 1.2.2
	- name: Install dependencies
	run: \|
	poetry install --no-dev
	sh install_local_dependency.sh
	# Before running the test you have to download the tags!
	- name: Run tests
	run: \|
	python get_data/get_fpbase_data.py allele_components/tags_fpbase.toml
	cd genestorian_module/test
	python -m unittest

	# Update docker image when committing to master branch if tests pass
	push_to_registry:
	name: Push Docker image to Docker Hub
	runs-on: ubuntu-latest
	needs: test
	if: github.ref == 'refs/heads/master'
	steps:
	- name: Check out the repo
	uses: actions/checkout@v3

	- name: Log in to Docker Hub
	uses: docker/login-action@v2
	with:
	username: ${{ secrets.DOCKER_USERNAME }}
	password: ${{ secrets.DOCKER_PASSWORD }}

	- name: Extract metadata (tags, labels) for Docker
	id: meta
	uses: docker/metadata-action@v2
	with:
	images: genestorian_data_refinement

	- name: Build and push Docker images
	uses: docker/build-push-action@v3.1.1

	with:
	context: .
	push: true
	tags: manulera/genestorian_data_refinement:latest
	labels: ${{ steps.meta.outputs.labels }}

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