fix dependencies

manulera · Oct 31, 2023 · f74ef96 · f74ef96
1 parent c2d15de
commit f74ef96
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Showing 3 changed files with 8 additions and 7 deletions.
diff --git a/api.py b/api.py
@@ -1,10 +1,10 @@
 from fastapi import FastAPI, Query
+from nltk.tree import ParentedTree, TreePrettyPrinter
 from starlette.responses import HTMLResponse, FileResponse
 from pydantic import BaseModel
-from genestorian_module.build_nltk_tags import build_nltk_tag
-from genestorian_module.build_nltk_trees import apply_pseudo_grammar, post_process_pseudo_grammar
+from genestorian_module.genestorian_module.build_nltk_tags import build_nltk_tag
+from genestorian_module.genestorian_module.build_nltk_trees import apply_pseudo_grammar, post_process_pseudo_grammar
 import json
-from nltk.tree import ParentedTree, TreePrettyPrinter
 
 
 def name2pattern(allele_name):
@@ -19,7 +19,8 @@ def name2pattern(allele_name):
         'allele_components/sequence_features.toml'
     ]
 
-    alleles_list = build_nltk_tag([allele_name.lower()], toml_files, "allele_components/separators.txt")
+    alleles_list = build_nltk_tag(
+        [allele_name.lower()], toml_files, "allele_components/separators.txt")
     return alleles_list[0]['pattern']
 
 

diff --git a/genestorian_module/genestorian_module/build_nltk_tags.py b/genestorian_module/genestorian_module/build_nltk_tags.py
@@ -1,5 +1,5 @@
-from genestorian_module.replace_feature import (build_feature_dict,
-                                                build_strain_list)
+from genestorian_module.genestorian_module.replace_feature import (build_feature_dict,
+                                                                   build_strain_list)
 import re
 import json
 import sys

diff --git a/genestorian_module/genestorian_module/replace_feature.py b/genestorian_module/genestorian_module/replace_feature.py
@@ -1,5 +1,5 @@
 import toml
-from genestorian_module import read_strains_tsv
+from genestorian_module.genestorian_module import read_strains_tsv
 import re