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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    883 96

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 646 178

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 456 100

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 380 90

  5. merqury merqury Public

    k-mer based assembly evaluation

    Shell 272 19

  6. verkko verkko Public

    Python 268 27

Repositories

Showing 10 of 38 repositories
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 646 178 21 3 Updated Jul 11, 2024
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility’s past year of commit activity
    C 1 3 0 0 Updated Jul 11, 2024
  • verkko Public
    marbl/verkko’s past year of commit activity
    Python 268 27 22 1 Updated Jul 10, 2024
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 6 0 0 0 Updated Jul 8, 2024
  • CHM13 Public

    The complete sequence of a human genome

    marbl/CHM13’s past year of commit activity
    883 96 21 (1 issue needs help) 0 Updated Jul 3, 2024
  • merqury Public

    k-mer based assembly evaluation

    marbl/merqury’s past year of commit activity
    Shell 272 19 22 (1 issue needs help) 0 Updated Jun 28, 2024
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 123 25 25 0 Updated Jun 28, 2024
  • seqrequester Public

    A tool for summarizing, extracting, generating and modifying DNA sequences.

    marbl/seqrequester’s past year of commit activity
    C 23 4 3 0 Updated Jun 26, 2024
  • ModDotPlot Public
    marbl/ModDotPlot’s past year of commit activity
    Python 99 MIT 8 5 0 Updated Jun 13, 2024
  • Winnowmap Public

    Long read / genome alignment software

    marbl/Winnowmap’s past year of commit activity
    C 231 22 25 0 Updated Jun 13, 2024
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