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Fix jax.config related CI errors #150

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Fix jax.config related CI errors

Fix jax.config related CI errors #150

Workflow file for this run

.github/workflows/ci.yml at 8e6fe5a
name: CI
on:
push:
branches:
- 'main'
pull_request:
jobs:
code-style:
name: Code Style
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.10'
cache: 'pip'
cache-dependency-path: 'formatting-requirements.txt'
- name: Install formatting dependencies
id: fmt-deps
run: pip install -r formatting-requirements.txt
- name: Check code style with `black`
run: black --check --diff .
- name: Check import order with `isort`
run: isort --check --diff .
if: success() || steps.fmt-deps.outcome == 'success'
linting:
name: Linting
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
submodules: 'recursive'
- uses: actions/setup-python@v4
with:
python-version: '3.10'
cache: 'pip'
cache-dependency-path: |
pyproject.toml
probnum/pyproject.toml
tests/requirements.txt
linting-requirements.txt
- name: Install probnum from submodule
working-directory: ./probnum
# The git fetch is needed because probnum reads its version information from the SCM
run: |
git fetch --tags --unshallow
pip install .
- name: Install linting dependencies
id: lint-deps
run: |
pip install ".[plotting]"
pip install -r tests/requirements.txt
pip install -r linting-requirements.txt
- name: Lint code with `pylint`
run: pylint src --jobs 0
- name: Lint tests with `pylint`
run: pylint tests/**/*.py --disable="redefined-outer-name"
if: success() || steps.lint-deps.outcome == 'success'
tests:
name: Tests
strategy:
fail-fast: false
matrix:
python-version:
- '3.10'
- '3.11'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
submodules: 'recursive'
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
cache-dependency-path: |
pyproject.toml
probnum/pyproject.toml
tests/requirements.txt
- name: Install probnum from submodule
working-directory: ./probnum
# The git fetch is needed because probnum reads its version information from the SCM
run: |
git fetch --tags --unshallow
pip install .
- name: Install test dependencies
run: |
pip install .
pip install -r tests/requirements.txt
- name: Run tests with `pytest`
run: pytest
experiments:
name: Experiments
strategy:
fail-fast: false
matrix:
python-version:
- '3.10'
- '3.11'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
submodules: 'recursive'
- name: Set up LaTeX
run: |
sudo apt-get update
sudo apt-get install $(cat probnum/apt.txt)
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
cache-dependency-path: |
pyproject.toml
probnum/pyproject.toml
experiments/requirements.txt
.github/workflows/experiment-requirements.txt
- name: Install probnum from submodule
working-directory: ./probnum
# The git fetch is needed because probnum reads its version information from the SCM
run: |
git fetch --tags --unshallow
pip install .
- name: Install experiment dependencies
run: |
pip install .
pip install -r experiments/requirements.txt
pip install -r .github/workflows/experiment-requirements.txt
- name: Run all experiment notebooks with `nbconvert`
run: |
for file in $(find -wholename "./experiments/*.ipynb")
do
echo "Running ${file}..."
jupyter nbconvert --to notebook --execute --ExecutePreprocessor.kernel_name=python3 $file
done