Build larch on linux and publish to Anaconda Cloud #3
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| name: Build larch on linux and publish to Anaconda Cloud | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| conda-publish: | |
| runs-on: ubuntu-latest | |
| environment: conda-publish | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Prepare build environment | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install build-essential zlib1g-dev python3-pip python3-pytest git git-lfs | |
| - name: Install conda | |
| run: | | |
| curl -L https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh > Miniconda3-latest-Linux-x86_64.sh | |
| bash Miniconda3-latest-Linux-x86_64.sh -b -p ~/miniconda | |
| ~/miniconda/bin/conda update -n base -c defaults conda | |
| - name: Create conda env | |
| run: | | |
| source ~/miniconda/etc/profile.d/conda.sh | |
| conda config --prepend channels conda-forge | |
| conda config --prepend channels bioconda | |
| conda config --show channels | |
| conda env create -f environment-dev.yml | |
| - name: Build conda package and upload to Anaconda Cloud | |
| env: | |
| ANACONDA_USER: ${{ vars.ANACONDA_USER }} | |
| ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
| ANACONDA_FLAGS: ${{ vars.ANACONDA_FLAGS }} | |
| INCLUDE_TESTS: ${{ vars.INCLUDE_TESTS }} | |
| run: | | |
| source ~/miniconda/etc/profile.d/conda.sh | |
| conda activate larch-dev | |
| export LARCH_VERSION=$(cat ./VERSION) | |
| export INCLUDE_TESTS=${INCLUDE_TESTS} | |
| conda build . --user ${ANACONDA_USER} --token ${ANACONDA_TOKEN} ${ANACONDA_FLAGS} |