reset index, and add_pheno_to_df index check #110

	name: Build and Test

	on:
	release:
	types:
	- published
	push:
	branches:
	- main
	pull_request:
	branches:
	- main

	jobs:
	build-and-test:
	if: ${{ !contains(github.event.head_commit.message, '[skip ci]' ) }}
	runs-on: ubuntu-latest
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: [3.8, 3.9, "3.10", 3.11] # quoted 3.10 needed due to this bug: https://github.com/actions/runner/issues/1989

	steps:
	- name: Checkout 🛎️
	uses: actions/checkout@v3

	- name: Install Pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- name: Ruff Linting
	uses: chartboost/ruff-action@v1

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip

	- name: Install multidms
	run: \|
	pip install --upgrade pip
	pip install -e ".[dev]"

	- name: Black Format Check
	uses: psf/black@stable
	with:
	options: "--check"
	src: "."
	jupyter: false
	version: "~= 23.3" # this is the version that ships with the vs code extension, currently

	- name: Test
	run: \|
	pytest
	pytest --doctest-modules

	- name: Test docs build
	run: \|
	make -C docs clean
	make -C docs html

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