update version #454
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| # github action including pymongo see https://github.com/marketplace/actions/mongodb-in-github-actions | |
| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ '3.8', '3.12'] | |
| mongodb-version: ['5.0', ] | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Set Up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install pandoc for ubuntu | |
| if: startsWith(matrix.os, 'ubuntu-') | |
| run: | | |
| sudo apt-get install -y pandoc | |
| - name: Install choco for windows | |
| if: startsWith(matrix.os, 'windows-') | |
| run: choco install pandoc -y | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools | |
| pip install -r requirements-dev.txt | |
| pip install pymongo | |
| # - name: Install MongoDB (Windows) # see: https://github.com/ankane/setup-mongodb | |
| # if: startsWith(matrix.os, 'windows-') | |
| # uses: ankane/setup-mongodb@v1 | |
| # with: | |
| # mongodb-version: 5.0 | |
| - name: Start MongoDB (Linux) | |
| if: startsWith(matrix.os, 'ubuntu-') | |
| uses: supercharge/mongodb-github-action@1.3.0 | |
| with: | |
| mongodb-version: ${{ matrix.mongodb-version }} | |
| - name: Run pytest coverage | |
| env: | |
| ZENODO_SANDBOX_API_TOKEN: ${{ secrets.ZENODO_SANDBOX_API_TOKEN }} | |
| ZENODO_API_TOKEN: ${{ secrets.ZENODO_API_TOKEN }} | |
| run: pytest --cov --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-dev.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| zenodo_cleanup: | |
| runs-on: ubuntu-latest | |
| needs: test | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| # This is the version of the action for setting up Python, not the Python version. | |
| uses: actions/setup-python@v4 | |
| with: | |
| # Semantic version range syntax or exact version of a Python version | |
| python-version: '3.8' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools | |
| pip install -r requirements-dev.txt | |
| - name: Cleanup Zenodo Sandbox | |
| env: | |
| ZENODO_SANDBOX_API_TOKEN: ${{ secrets.ZENODO_SANDBOX_API_TOKEN }} | |
| ZENODO_API_TOKEN: ${{ secrets.ZENODO_API_TOKEN }} | |
| run: python tests/clean_zenodo_sandbox.py |