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another try [skip-ci]
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@matthiasprobst
matthiasprobst committed May 2, 2024
1 parent 451ff64 commit 181ef8d
Showing 1 changed file with 87 additions and 24 deletions.
111 changes: 87 additions & 24 deletions docs/practical_examples/knowledge_graph.ipynb
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Expand Up @@ -170,7 +170,7 @@
},
{
"cell_type": "code",
"execution_count": 7,
"execution_count": 16,
"id": "064a9e31-1fd0-429e-9189-663e950bc52f",
"metadata": {},
"outputs": [],
Expand All @@ -182,7 +182,7 @@
},
{
"cell_type": "code",
"execution_count": 8,
"execution_count": 17,
"id": "ce1a26f6-ad59-4014-b5b2-dcee38f11a26",
"metadata": {},
"outputs": [],
Expand All @@ -192,7 +192,7 @@
},
{
"cell_type": "code",
"execution_count": 9,
"execution_count": 18,
"id": "78c9adf7-43f0-4aa1-8740-149bf3a5f74f",
"metadata": {},
"outputs": [],
Expand All @@ -203,7 +203,7 @@
},
{
"cell_type": "code",
"execution_count": 10,
"execution_count": 21,
"id": "e8d13d2e-d66e-4028-8909-7192cfef1bf6",
"metadata": {},
"outputs": [
Expand All @@ -216,32 +216,64 @@
]
},
{
"ename": "UnicodeEncodeError",
"evalue": "'charmap' codec can't encode characters in position 263607-263621: character maps to <undefined>",
"output_type": "error",
"traceback": [
"\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[1;31mUnicodeEncodeError\u001b[0m Traceback (most recent call last)",
"Cell \u001b[1;32mIn[10], line 3\u001b[0m\n\u001b[0;32m 1\u001b[0m pyvis_graph\u001b[38;5;241m=\u001b[39m subgraph\u001b[38;5;241m.\u001b[39mbuild_pyvis_graph(notebook\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;01mTrue\u001b[39;00m, style\u001b[38;5;241m=\u001b[39mVIS_STYLE)\n\u001b[0;32m 2\u001b[0m pyvis_graph\u001b[38;5;241m.\u001b[39mcdn_resources \u001b[38;5;241m=\u001b[39m \u001b[38;5;124m'\u001b[39m\u001b[38;5;124min_line\u001b[39m\u001b[38;5;124m'\u001b[39m\n\u001b[1;32m----> 3\u001b[0m \u001b[43mpyvis_graph\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mshow\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mgraph.html\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mnotebook\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43;01mTrue\u001b[39;49;00m\u001b[43m)\u001b[49m\n",
"File \u001b[1;32m~\\anaconda3\\envs\\h5tbx\\lib\\site-packages\\pyvis\\network.py:546\u001b[0m, in \u001b[0;36mNetwork.show\u001b[1;34m(self, name, local, notebook)\u001b[0m\n\u001b[0;32m 544\u001b[0m \u001b[38;5;28mprint\u001b[39m(name)\n\u001b[0;32m 545\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m notebook:\n\u001b[1;32m--> 546\u001b[0m \u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mwrite_html\u001b[49m\u001b[43m(\u001b[49m\u001b[43mname\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mopen_browser\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43;01mFalse\u001b[39;49;00m\u001b[43m,\u001b[49m\u001b[43mnotebook\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[38;5;28;43;01mTrue\u001b[39;49;00m\u001b[43m)\u001b[49m\n\u001b[0;32m 547\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m 548\u001b[0m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mwrite_html(name, open_browser\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;01mTrue\u001b[39;00m)\n",
"File \u001b[1;32m~\\anaconda3\\envs\\h5tbx\\lib\\site-packages\\pyvis\\network.py:530\u001b[0m, in \u001b[0;36mNetwork.write_html\u001b[1;34m(self, name, local, notebook, open_browser)\u001b[0m\n\u001b[0;32m 528\u001b[0m \u001b[38;5;28;01melif\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mcdn_resources \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124min_line\u001b[39m\u001b[38;5;124m\"\u001b[39m \u001b[38;5;129;01mor\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mcdn_resources \u001b[38;5;241m==\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mremote\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n\u001b[0;32m 529\u001b[0m \u001b[38;5;28;01mwith\u001b[39;00m \u001b[38;5;28mopen\u001b[39m(getcwd_name, \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mw+\u001b[39m\u001b[38;5;124m\"\u001b[39m) \u001b[38;5;28;01mas\u001b[39;00m out:\n\u001b[1;32m--> 530\u001b[0m \u001b[43mout\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mwrite\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mhtml\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m 531\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m 532\u001b[0m \u001b[38;5;28;01massert\u001b[39;00m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mcdn_resources is not in [\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124min_line\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m,\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mremote\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m,\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mlocal\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124m].\u001b[39m\u001b[38;5;124m\"\u001b[39m\n",
"File \u001b[1;32m~\\anaconda3\\envs\\h5tbx\\lib\\encodings\\cp1252.py:19\u001b[0m, in \u001b[0;36mIncrementalEncoder.encode\u001b[1;34m(self, input, final)\u001b[0m\n\u001b[0;32m 18\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mencode\u001b[39m(\u001b[38;5;28mself\u001b[39m, \u001b[38;5;28minput\u001b[39m, final\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;01mFalse\u001b[39;00m):\n\u001b[1;32m---> 19\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[43mcodecs\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mcharmap_encode\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;28;43minput\u001b[39;49m\u001b[43m,\u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43merrors\u001b[49m\u001b[43m,\u001b[49m\u001b[43mencoding_table\u001b[49m\u001b[43m)\u001b[49m[\u001b[38;5;241m0\u001b[39m]\n",
"\u001b[1;31mUnicodeEncodeError\u001b[0m: 'charmap' codec can't encode characters in position 263607-263621: character maps to <undefined>"
]
"data": {
"text/html": [
"\n",
" <iframe\n",
" width=\"100%\"\n",
" height=\"600px\"\n",
" src=\"graph.html\"\n",
" frameborder=\"0\"\n",
" allowfullscreen\n",
" \n",
" ></iframe>\n",
" "
],
"text/plain": [
"<IPython.lib.display.IFrame at 0x1911e48ecd0>"
]
},
"execution_count": 21,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"pyvis_graph= subgraph.build_pyvis_graph(notebook=True, style=VIS_STYLE)\n",
"pyvis_graph.cdn_resources = 'in_line'\n",
"pyvis_graph.show('graph.html', notebook=True)"
"pyvis_graph.cdn_resources = 'remote'\n",
"pyvis_graph.show('graph.html', local=False, notebook=True)"
]
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 11,
"id": "a44f0039-00b8-44c5-b237-ccba12993bdd",
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"{\n",
" \"@context\": {\n",
" \"fname\": \"http://xmlns.com/foaf/0.1/firstName\",\n",
" \"lname\": \"http://xmlns.com/foaf/0.1/lastName\"\n",
" },\n",
" \"@graph\": [\n",
" {\n",
" \"@id\": \"_:N14\",\n",
" \"http://www.w3.org/2004/02/skos/core#definition\": \"A hint\"\n",
" },\n",
" {\n",
" \"@id\": \"http://www.w3.org/ns/prov#Person\",\n",
" \"fname\": \"Matthias\",\n",
" \"lname\": \"Probst\"\n",
" }\n",
" ]\n",
"}\n"
]
}
],
"source": [
"with h5tbx.File() as h5:\n",
" h5.create_dataset(name='test', data=4.3)\n",
Expand All @@ -259,7 +291,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 12,
"id": "3e8834fc-6217-42c3-b442-2565b012f828",
"metadata": {},
"outputs": [],
Expand All @@ -271,7 +303,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 13,
"id": "077911e8-8bc3-4b58-a480-df605bdceae4",
"metadata": {},
"outputs": [],
Expand All @@ -286,10 +318,41 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 14,
"id": "67f99459-8351-4819-8a67-2b58d4b1e398",
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Warning: When cdn_resources is 'local' jupyter notebook has issues displaying graphics on chrome/safari. Use cdn_resources='in_line' or cdn_resources='remote' if you have issues viewing graphics in a notebook.\n",
"tmp.grpah.html\n"
]
},
{
"data": {
"text/html": [
"\n",
" <iframe\n",
" width=\"100%\"\n",
" height=\"600px\"\n",
" src=\"tmp.grpah.html\"\n",
" frameborder=\"0\"\n",
" allowfullscreen\n",
" \n",
" ></iframe>\n",
" "
],
"text/plain": [
"<IPython.lib.display.IFrame at 0x1914309d220>"
]
},
"execution_count": 14,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"kg_from_jsonld = kglab.KnowledgeGraph().load_jsonld('test.jsonld')\n",
"\n",
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