refine versions

requirements-dev.txt

@@ -3,6 +3,6 @@
 pytest>=8.3.3
 pytest-cov>=5.0.0
 mongomock == 4.1.2
-scikit-image>=1.3.2
-scikit-learn>=0.21.0
+scikit-image>=0.21.0
+scikit-learn
 scipy>=1.10.1

requirements-doc.txt

@@ -1,10 +1,11 @@
 -e .
 -r requirements.txt
-sphinx >= 4.5.0
-sphinx_book_theme>=0.3.3
-sphinx-copybutton>=0.5.2
-sphinx-design>=0.4.1
-myst-nb>=0.17.2
-sphinxcontrib-bibtex>=2.6.3
-kglab>=2.6.3
-scikit-image>=1.3.2
+Sphinx==4.5.0
+sphinx_book_theme==0.3.3
+sphinx-copybutton==0.5.2
+sphinx-design==0.4.1
+myst-nb==0.17.2
+sphinxcontrib-bibtex==2.6.3
+
+scikit-image==0.24.0
+scikit-learn

requirements.txt

@@ -23,4 +23,4 @@ python-gitlab
 pypandoc>=1.11
 pydantic>=2.8.2
 # other:
-ontolutils >= 0.2.23
+ontolutils >= 0.5.0

setup.cfg

@@ -31,12 +31,12 @@ install_requires =
     IPython >= 7.34.0  # colab wants 7.34.0
     pyyaml > 6.0  # 5.4 does not work with python 3.11!
     xarray >= 2022.3.0
-    pint == 0.21.1  # pint >= 0.19.2<0.22.0 Note: 0.22.0 shows bad str-output for quantities with format Lx~
+    pint==0.21.1  # pint >= 0.19.2<0.22.0 Note: 0.22.0 shows bad str-output for quantities with format Lx~
     pint_xarray >= 0.2.1
     regex>=2020.7.9
     packaging>=24.1
     ontolutils>=0.5.0
-    python-forge == 18.6.0
+    python-forge==18.6.0
     requests>=2.32.3
     pydantic>=2.8.2
     rdflib>=7.0.0
@@ -56,32 +56,31 @@ snt =
 gui =
     PyQt5==5.15.10
 test =
-    pytest >= 7.1.2
-    pytest-cov
+    pytest>=8.3.3
+    pytest-cov>=5.0.0
     pylint
-    mongomock == 4.1.2
+    mongomock==4.1.2
     xmltodict<=0.13.0
-    scipy  # provides netcdf4
+    scipy>=1.10.1  # provides netcdf4
     %(csv)s
     %(snt)s
     %(database)s
 docs =
-;     kglab
     %(csv)s
     %(snt)s
     %(database)s
     %(test)s
 ;     jupyterlab>4.0.0
-    Sphinx >= 3,<5
-    sphinx_book_theme == 0.3.3
-    sphinx-copybutton
-    scikit-image
+    Sphinx==4.5.0
+    sphinx_book_theme==0.3.3
+    sphinx-copybutton==0.5.2
+    sphinx-design==0.4.1
+    myst-nb==0.17.2
+    sphinxcontrib-bibtex==2.6.3
+    scikit-image>=0.21.0
     scikit-learn
 ;    nbsphinx
-    sphinx-design
-    simplejson
-    myst-nb
-    sphinxcontrib-bibtex
+;     simplejson
 
 complete =
     %(layout_validation)s