update DOI

docs/colab/quickstart.ipynb

@@ -21,7 +21,7 @@
     "- Define important attributes and their usage in a metadata convention (e.g. a YAML file)\n",
     "- Publish your convention on a repository like [Zenodo](https://zenodo.org/)\n",
     "\n",
-    "At this time we assume, that we have done this already, thus we'll be using a convention published on [Zenodo (doi/rec-id: 10156750)](https://zenodo.org/records/10156750), that already exists:"
+    "At this time we assume, that we have done this already, thus we'll be using a convention published on [Zenodo (doi/rec-id: 10428822)](https://zenodo.org/records/10428822), that already exists:"
    ]
   },
   {

docs/gettingstarted/quickoverview.ipynb

@@ -78,7 +78,7 @@
     }
    ],
    "source": [
-    "cv = h5tbx.convention.from_zenodo('10156750')\n",
+    "cv = h5tbx.convention.from_zenodo('10428822')\n",
     "cv"
    ]
   },

docs/userguide/convention/creating_a_new_convention.ipynb

@@ -611,7 +611,7 @@
     }
    ],
    "source": [
-    "cv = h5tbx.convention.from_zenodo(doi_or_recid='10156750')\n",
+    "cv = h5tbx.convention.from_zenodo(doi_or_recid='10428822')\n",
     "cv"
    ]
   },

docs/userguide/convention/examples/Provenance.ipynb

@@ -64,7 +64,7 @@
     }
    ],
    "source": [
-    "cv = h5tbx.convention.from_zenodo('https://zenodo.org/records/10156750')\n",
+    "cv = h5tbx.convention.from_zenodo('https://zenodo.org/records/10428822')\n",
     "\n",
     "h5tbx.use(cv)"
    ]

h5rdmtoolbox/convention/core.py

@@ -727,8 +727,8 @@ def from_zenodo(doi_or_recid: str,
     Parameters
     ----------
     doi_or_recid: str
-        DOI of the zenodo repository. Can be a short DOI or a full DOI or the URL (e.g. 10156750 or
-        10.5281/zenodo.10156750 or https://doi.org/10.5281/zenodo.10156750 or only the record id, e.g. 10156750)
+        DOI of the zenodo repository. Can be a short DOI or a full DOI or the URL (e.g. 10428822 or
+        10.5281/zenodo.10428822 or https://doi.org/10.5281/zenodo.10428822 or only the record id, e.g. 10428822)
     name: str=None
         Name to be sed for the filename. If None, the name is taken from the zenodo record.
     overwrite: bool = False

h5rdmtoolbox/repository/zenodo/tokens.py

@@ -38,7 +38,7 @@ def get_api_token(sandbox: bool,
 
     logger.debug('No environment variable found for the zenodo token. Trying to read it from the config file '
                  '%s .' % zenodo_ini_filename)
-
+    print(env_token)
     zenodo_ini_filename = _parse_ini_file(zenodo_ini_filename)
     config = configparser.ConfigParser()
     config.read(zenodo_ini_filename)

tests/conventions/standard_attributes/standard_names/test_interface.py

@@ -11,8 +11,8 @@
 class TestStandardAttributes(unittest.TestCase):
 
     def setUp(self) -> None:
-        # cv = h5tbx.convention.from_zenodo(doi_or_recid=10156750, overwrite=True)
-        repo = zenodo.ZenodoRecord(10156750)
+        # cv = h5tbx.convention.from_zenodo(doi_or_recid=10428822, overwrite=True)
+        repo = zenodo.ZenodoRecord(10428822)
         cv = h5tbx.convention.from_repo(repo,
                                         name='tutorial_convention.yaml',
                                         take_existing=True)

tests/conventions/standard_attributes/standard_names/test_provenance.py

@@ -21,16 +21,16 @@ def setUp(self) -> None:
 
         h5tbx.use(None)
 
-        # cv = h5tbx.convention.from_zenodo('https://zenodo.org/record/10156750',
+        # cv = h5tbx.convention.from_zenodo('https://zenodo.org/record/10428822',
         #                                    overwrite=True,
         #                                    force_download=True)
         from h5rdmtoolbox.repository.zenodo import ZenodoRecord
-        repo = ZenodoRecord(10156750)
+        repo = ZenodoRecord(10428822)
         cv = h5tbx.convention.from_repo(repo,
                                          name='tutorial_convention.yaml',
                                          take_existing=True,
                                          force_download=True)
-        # cv = h5tbx.convention.from_zenodo('https://zenodo.org/record/10156750',
+        # cv = h5tbx.convention.from_zenodo('https://zenodo.org/record/10428822',
         #                                    overwrite=True,
         #                                    force_download=True)
 

tests/conventions/test_conventions.py

@@ -210,7 +210,7 @@ def test_overload_standard_attributes(self):
     def test_overwrite_existing_file(self):
         if self.connected:
             # delete an existing convention like this first:
-            h5tbx.convention.from_zenodo(doi_or_recid='10156750', overwrite=False)
+            h5tbx.convention.from_zenodo(doi_or_recid='10428822', overwrite=False)
             # h5tbx.convention.from_yaml('test_convention.yaml')
             h5tbx.use('h5rdmtoolbox-tutorial-convention')
 
@@ -545,8 +545,8 @@ def test_from_zenodo(self):
 
                 # we can download from zenodo by passing the short or full DOI or the URL:
 
-                dois = ('10156750', '10.5281/zenodo.10156750', 'https://zenodo.org/record/10156750',
-                        'https://doi.org/10.5281/zenodo.10156750')
+                dois = ('10428822', '10.5281/zenodo.10428822', 'https://zenodo.org/record/10428822',
+                        'https://doi.org/10.5281/zenodo.10428822')
                 h5tbx.UserDir.clear_cache()
                 with self.assertRaises(ValueError):  # because it is not a standard attribute YAML file!
                     cv = h5tbx.convention.from_zenodo(doi=10428795)

tests/test_repr.py

@@ -20,15 +20,15 @@ def test_process_string_for_link(self):
         self.assertFalse(has_url)
         self.assertEqual(processed_string, string_without_url)
 
-        zenodo_url = 'https://zenodo.org/record/10156750'
-        img_url = f'https://zenodo.org/badge/DOI/10.5281/zenodo.10156750.svg'
+        zenodo_url = 'https://zenodo.org/record/10428822'
+        img_url = f'https://zenodo.org/badge/DOI/10.5281/zenodo.10428822.svg'
         self.assertEqual(f'<a href="{zenodo_url}"><img src="{img_url}" alt="DOI"></a>',
                          process_string_for_link(zenodo_url)[0])
 
-        zenodo_url = 'https://doi.org/10.5281/zenodo.10156750'
-        img_url = f'https://zenodo.org/badge/DOI/10.5281/zenodo.10156750.svg'
+        zenodo_url = 'https://doi.org/10.5281/zenodo.10428822'
+        img_url = f'https://zenodo.org/badge/DOI/10.5281/zenodo.10428822.svg'
         self.assertEqual(f'<a href="{zenodo_url}"><img src="{img_url}" alt="DOI"></a>',
-                         process_string_for_link('10.5281/zenodo.10156750')[0])
+                         process_string_for_link('10.5281/zenodo.10428822')[0])
 
         string_with_url = "This is a string with a web URL: https://www.example.com which goes on and on and on"
         string_with_href = 'This is a string with a web URL: ' \