add github action

.github/workflows/tests.yml

@@ -0,0 +1,48 @@
+# github action including pymongo see https://github.com/marketplace/actions/mongodb-in-github-actions
+
+name: Tests
+
+on:
+  push:
+    branches:
+      - main
+      - dev
+
+jobs:
+  test:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ ubuntu-latest, macos-latest, windows-latest ]
+        python-version: [ '3.8', '3.9' , '3.10', '3.11', '3.12']
+
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v3
+
+      - name: Set Up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install setuptools
+          pip install -r requirements-dev.txt
+
+      - name: Run pytest coverage
+        run: pytest --cov --cov-report=xml
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v3
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          file: ./coverage.xml
+      - uses: actions/cache@v3
+        with:
+          path: ~/.cache/pip
+          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-dev.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-

.gitignore

@@ -1,3 +1,4 @@
+@ -1,47 +0,0 @@
 # build
 *.egg*
 build/
@@ -45,3 +46,4 @@ default.yaml
 
 examples/*.json
 examples/*.jsonld
+*.bak

README.md

@@ -1,5 +1,10 @@
 # synpivimage
 
+
+![Tests](https://github.com/matthiasprobst/synpivimage/actions/workflows/tests.yml/badge.svg)
+![DOCS](https://codecov.io/gh/matthiasprobst/synpivimage/branch/dev/graph/badge.svg)
+![pyvers](https://img.shields.io/badge/python-3.8%20%7C%203.9%20%7C%203.10%20%7C%203.11%20%7C%203.12-blue)
+
 Tool to build synthetic Particle Image Velocimetry (PIV) images based on commonly accepted literature.
 
 It uses the commonly used assumptions and DOES NOT include optical aberrations, such as lens distortion or such. Noise

requirements-dev.txt

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+-e .
+-r requirements.txt
+xmltodict
+pyyaml>6.0.0
+pytest>=7.1.2
+pytest-cov

requirements.txt

@@ -0,0 +1,13 @@
+numpy
+pandas
+pathlib
+h5py
+xarray
+tifffile
+pyyaml
+tqdm
+matplotlib
+python-dotenv
+opencv-python
+PyQt5
+scipy