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Merge pull request #19 from mc2-center/add-component-ids
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Add component ids
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@Bankso
Bankso authored Aug 17, 2023
2 parents 201c8c0 + 7e40478 commit d1b52c1
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Showing 9 changed files with 188 additions and 20 deletions.
25 changes: 16 additions & 9 deletions mc2.model.csv
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158 changes: 156 additions & 2 deletions mc2.model.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -4768,6 +4768,9 @@
{
"@id": "bts:Component"
},
{
"@id": "bts:DatasetViewId"
},
{
"@id": "bts:DatasetPubmedId"
},
Expand Down Expand Up @@ -5240,6 +5243,25 @@
"list like"
]
},
{
"@id": "bts:DatasetViewId",
"@type": "rdfs:Class",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"rdfs:label": "DatasetViewId",
"rdfs:subClassOf": [
{
"@id": "schema:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "DatasetView_id",
"sms:required": "sms:true",
"sms:validationRules": [
"unique"
]
},
{
"@id": "bts:EducationalResource",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -5270,6 +5292,9 @@
{
"@id": "bts:Component"
},
{
"@id": "bts:EducationalResourceId"
},
{
"@id": "bts:ResourceTitle"
},
Expand Down Expand Up @@ -6391,7 +6416,7 @@
{
"@id": "bts:ResourceContributors",
"@type": "rdfs:Class",
"rdfs:comment": "The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list. ",
"rdfs:comment": "The name(s) of the contributor(s) to the item. Multiple contributor names should be provided as a comma-separated list.",
"rdfs:label": "ResourceContributors",
"rdfs:subClassOf": [
{
Expand Down Expand Up @@ -8042,6 +8067,25 @@
"list like"
]
},
{
"@id": "bts:EducationalResourceId",
"@type": "rdfs:Class",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"rdfs:label": "EducationalResourceId",
"rdfs:subClassOf": [
{
"@id": "schema:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "EducationalResource_id",
"sms:required": "sms:true",
"sms:validationRules": [
"unique"
]
},
{
"@id": "bts:Grant",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -8199,6 +8243,9 @@
{
"@id": "bts:Component"
},
{
"@id": "bts:GrantViewId"
},
{
"@id": "bts:GrantName"
},
Expand Down Expand Up @@ -8903,6 +8950,25 @@
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:GrantViewId",
"@type": "rdfs:Class",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"rdfs:label": "GrantViewId",
"rdfs:subClassOf": [
{
"@id": "schema:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "GrantView_id",
"sms:required": "sms:true",
"sms:validationRules": [
"unique"
]
},
{
"@id": "bts:Institution",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -9648,6 +9714,9 @@
{
"@id": "bts:Component"
},
{
"@id": "bts:PersonViewId"
},
{
"@id": "bts:PersonGrantNumber"
},
Expand Down Expand Up @@ -10246,6 +10315,25 @@
"list like"
]
},
{
"@id": "bts:PersonViewId",
"@type": "rdfs:Class",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"rdfs:label": "PersonViewId",
"rdfs:subClassOf": [
{
"@id": "schema:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "PersonView_id",
"sms:required": "sms:true",
"sms:validationRules": [
"unique"
]
},
{
"@id": "bts:Project",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -10387,6 +10475,9 @@
{
"@id": "bts:Component"
},
{
"@id": "bts:ProjectViewId"
},
{
"@id": "bts:ProjectName"
},
Expand Down Expand Up @@ -10888,9 +10979,28 @@
}
],
"sms:displayName": "Project Consortium Name",
"sms:required": "sms:false",
"sms:required": "sms:true",
"sms:validationRules": []
},
{
"@id": "bts:ProjectViewId",
"@type": "rdfs:Class",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"rdfs:label": "ProjectViewId",
"rdfs:subClassOf": [
{
"@id": "schema:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "ProjectView_id",
"sms:required": "sms:true",
"sms:validationRules": [
"unique"
]
},
{
"@id": "bts:Publication",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -13181,6 +13291,9 @@
{
"@id": "bts:Component"
},
{
"@id": "bts:PublicationViewId"
},
{
"@id": "bts:PublicationGrantNumber"
},
Expand Down Expand Up @@ -13765,6 +13878,25 @@
"unique"
]
},
{
"@id": "bts:PublicationViewId",
"@type": "rdfs:Class",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"rdfs:label": "PublicationViewId",
"rdfs:subClassOf": [
{
"@id": "schema:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "PublicationView_id",
"sms:required": "sms:true",
"sms:validationRules": [
"unique"
]
},
{
"@id": "bts:Component",
"@type": "rdfs:Class",
Expand Down Expand Up @@ -18300,6 +18432,9 @@
{
"@id": "bts:Component"
},
{
"@id": "bts:ToolViewId"
},
{
"@id": "bts:ToolPubmedId"
},
Expand Down Expand Up @@ -18826,6 +18961,25 @@
"int"
]
},
{
"@id": "bts:ToolViewId",
"@type": "rdfs:Class",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"rdfs:label": "ToolViewId",
"rdfs:subClassOf": [
{
"@id": "schema:Thing"
}
],
"schema:isPartOf": {
"@id": "http://schema.biothings.io"
},
"sms:displayName": "ToolView_id",
"sms:required": "sms:true",
"sms:validationRules": [
"unique"
]
},
{
"@id": "bts:NIH",
"@type": "rdfs:Class",
Expand Down
3 changes: 2 additions & 1 deletion modules/dataset/annotationProperty.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,7 @@ Dataset Tumor Type,"The tumor type(s), if applicable, of the data collected on.
Dataset Tissue,"Tissue type(s) associated with the dataset. Multiple values permitted, comma separated.","Gonad, Abdominal Esophagus, Adipose Tissue, Adrenal Gland, Alveolus, Aorta, Artery, Ascending Colon, Bile Duct, Bladder, Blood, Blood Vessel, Bone, Bone Marrow, Brain, Breast, Caecum, Cancer-Associated Fibroblast, Cardia, Cartilage, Cervix Uteri, Choroid, Colon, Connective and Soft Tissue, Cornea, Duodenum, Ear, Embryo, Embryonic Heart, Endocervix, Endometrium, Endothelium, Epithelium, Esophagus, Eye, Fallopian Tube, Foreskin, Frontal Lobe, Gastroesophageal Junction, Gastrointestinal Tract, Genitourinary, Hair Follicle, Head and Neck, Heart, Heart Muscle, Hematopoietic System, Hippocampus, Intestine, Intra-Abdominal Lymph Nodes, Intrathoracic Lymph Nodes, Joint, Kidney, Larynx, Ligament, Liver, Lung, Lymph, Lymph Node, Lymph Nodes of Axilla or Arm, Lymph Nodes of Inguinal Region or Leg, Lymphatic System, Lymphoid Tissue, Main Bronchus, Mammary Gland, Meninges, Mesenchyme, Mucosa, Muscle, Nasal Cavity, Nervous System, Not Applicable, Olfactory Mucosa, Omentum, Oral Cavity, Oral Mucosa, Ovary, Pancreas, Pelvic Lymph Nodes, Pending Annotation, Periodontal Ligament, Peripheral Nerves, Peritoneum, Pharynx, Pituitary Gland, Placenta, Pleura, Prostate Gland, Rectum, Reproductive System, Respiratory System, Salivary Gland, Sclera, Sinonasal Tract, Skin, Small Intestine, Spinal Cord, Spleen, Stomach, Synovial Membrane, Tendon, Testis, Thymus, Thyroid Gland, Tongue, Tonsil, Trachea, Umbilical Cord, Unspecified, Uterus, Vagina, Vascular Endothelium, Vein, Vertebra, Peripheral Blood Mononuclear Cell",,TRUE,,,,,list like
Dataset File Formats,"A list of file formats associated with the dataset. Multiple values permitted, comma separated.","AVI, BAI, BAM, BED, CDS, CHP, COOL, CSV, DB, DS_Store, FASTA, FASTQ, FCS, FIG, FREQ, GCG, GCT, GCTx, GFF3, GTF, GZIP Format, HDF, HDF5, HTML, IDAT, JPG, JSON, LIF, MAP, MAT, MATLAB script, MSF, MTX, PDF, PNG, PZFX, Python Script, R File Format, RAW, RDS, ROUT, RPROJ, RTF, SGI, SRA, STAT, TAR Format, TDF, TIFF, TSV, TXT, VCF, WIG, XML, ZIP, bed12, bedgraph, cel, cloupe, docx, mzIdentML, mzXML, pptx, rcc, xls, xlsx, MGF, BIGWIG, H5AD, H5, SF, PKL, BPM, Unspecified, Pending Annotation",,FALSE,,,,,list like
Dataset Grant,"Datasets associated with a grant, joined by uuids from the dataset and grant table.",,"Component. Dataset, Grant",FALSE,,,"Dataset, Grant",,
Dataset View,The denormalized manifest for dataset submission.,,"Component, Dataset Pubmed Id, Dataset Grant Number, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats",FALSE,,,"Publication, Grant, Dataset",,
Dataset View,The denormalized manifest for dataset submission.,,"Component, DatasetView_id, Dataset Pubmed Id, Dataset Grant Number, Dataset Name, Dataset Alias, Dataset Description, Dataset Design, Dataset Assay, Dataset Species, Dataset Tumor Type, Dataset Tissue, Dataset Url, Dataset File Formats",FALSE,,,"Publication, Grant, Dataset",,
Dataset Grant Number,"Grant number(s) associated with the dataset's development. Multiple values permitted, comma separated.","Affiliated/Non-Grant Associated, CA184897, CA184898, CA188388, CA193313, CA193417, CA193419, CA193461, CA193489, CA195469, CA199315, CA202123, CA202144, CA202177, CA202229, CA202241, CA209891, CA209923, CA209971, CA209975, CA209978, CA209988, CA209992, CA209997, CA210152, CA210173, CA210180, CA210181, CA210184, CA210190, CA214282, CA214292, CA214297, CA214300, CA214354, CA214369, CA214381, CA214411, CA215709, CA215794, CA215798, CA215845, CA215848, CA217297, CA217376, CA217377, CA217378, CA217450, CA217456, CA217514, CA217613, CA217617, CA217655, CA220378, CA223976, CA224012, CA224013, CA224044, CA225088, CA225566, CA227136, CA227544, CA227550, CA228608, CA228963, CA231978, CA232137, CA232161, CA232209, CA232216, CA232382, CA232517, CA234787, CA235747, CA238475, CA238720, CA238728, CA240301, CA241137, CA241927, CA243004, CA243007, CA243072, CA243073, CA243075, CA244100, CA244101, CA244107, CA244109, CA245313, CA248890, CA249799, CA250040, CA250044, CA250046, CA250481, CA251443, CA253248, CA253472, CA253540, CA253547, CA253553, CA254200, CA254886, CA256054, CA256481, CA260432, CA261694, CA261701, CA261717, CA261719, CA261822, CA261841, CA261842, CA263001, CA264583, CA264610, CA264611, CA264620, CA267170, CA268069, CA268072, CA268083, CA268084, CA271273, CA274492, CA274494, CA274499, CA274502, CA274509, CA275808",,TRUE,,,,,list like
Dataset Pubmed Id,"The PubMed identifer(s) associated with the development of the dataset. Multiple values permitted, comma separated.",,,TRUE,,,,,list like
DatasetView_id,A unique primary key that enables record updates using schematic.,,,TRUE,,,,,unique
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