test: skipp all tests (#47)

mcanouil · Aug 7, 2023 · 7e9b862 · 7e9b862
1 parent 70faeb3
commit 7e9b862
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diff --git a/NEWS.md b/NEWS.md
@@ -10,7 +10,7 @@
 ## Tests
 
 - In `tests/testthat/test-load_rcc.R`,
-  - fix: add `testthat::skip_on_cran()` to decrease CRAN checks computation time.
+  - fix: skip tests to decrease CRAN checks computation time.
 
 **Full Changelog**: <https://github.com/mcanouil/NACHO/compare/v2.0.4...v2.0.5>
 

diff --git a/tests/testthat.R b/tests/testthat.R
@@ -3,6 +3,8 @@ library(NACHO)
 
 # setwd("tests")
 
+if (!identical(Sys.getenv("NOT_CRAN"), "true")) return()
+
 rcc_files_directory <- "testthat/plexset_data"
 plexset_files <- list.files(rcc_files_directory, full.names = TRUE, pattern = "\\.RCC")
 plexset_tidy <- data.frame(stringsAsFactors = FALSE,

diff --git a/tests/testthat/test-load_rcc.R b/tests/testthat/test-load_rcc.R
@@ -68,7 +68,6 @@ test_that("no housekeeping norm and prediction", {
 })
 
 test_that("using GEO", {
-  skip_on_cran()
   gse <- try(GEOquery::getGEO(GEO = "GSE74821"), silent = TRUE)
   if (!inherits(gse, "try-error")) {
     targets <- Biobase::pData(Biobase::phenoData(gse[[1]]))