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@mdcatapult

Medicines Discovery Catapult

Multidisciplinary expertise in Bioinformatics, Cheminformatics, Bioimaging informatics, Machine Learning, Natural Language Processing and Software Engineering

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  1. json-combiner json-combiner Public

    Utility to scan and parse files by format and convert them into json output that can be ingested by mongoimport, Currently supports parsing of json and xml formats

    Scala 1

  2. image-model-runner image-model-runner Public

    Python 1

  3. py-mongo py-mongo Public

    Wrapper for pymongo to allow simple instantiation of MongoDB from configuration.

    Python 1

  4. aurac-web-plugin aurac-web-plugin Public

    Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.

    TypeScript 1

  5. deepfigures-open deepfigures-open Public

    Forked from allenai/deepfigures-open

    Companion code to the paper "Extracting Scientific Figures with Distantly Supervised Neural Networks" 🤖

    Python

  6. xml-splitter xml-splitter Public

    Go

Repositories

Showing 10 of 41 repositories
  • waters2imzml Public

    This script converts Waters raw data files to imzML format using ProteoWizard (through Docker).

    mdcatapult/waters2imzml’s past year of commit activity
    Python 0 0 0 0 Updated Nov 13, 2024
  • COSHH-API Public

    Go API complementing the COSHH UI web app

    mdcatapult/COSHH-API’s past year of commit activity
    Go 0 Apache-2.0 1 0 0 Updated Sep 16, 2024
  • COSHH-UI Public

    Angular web app for tracking the locations and expiry dates of laboratory chemicals

    mdcatapult/COSHH-UI’s past year of commit activity
    TypeScript 0 Apache-2.0 1 0 0 Updated Sep 3, 2024
  • image-converter Public

    Web service for cropping .ome.tiff files and combining .tiff files into a single pyramid .ome.tiff file

    mdcatapult/image-converter’s past year of commit activity
    Go 0 Apache-2.0 0 0 0 Updated Jul 4, 2024
  • gitlab-ci-cd-versioning Public

    Code versioning and other continuous integration helpers for Gitlab CI/CD pipelines

    mdcatapult/gitlab-ci-cd-versioning’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Jul 3, 2024
  • regex-entity-resolver Public

    Scala web service for identifying terms within text and resolving them to a value

    mdcatapult/regex-entity-resolver’s past year of commit activity
    Scala 0 Apache-2.0 0 0 0 Updated Jul 2, 2024
  • ai-tool-experiments Public

    Lots and lots of LLM agent and RAG demos using crew-ai, langchain & llama-index.

    mdcatapult/ai-tool-experiments’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jun 27, 2024
  • supervisor Public

    Part of the Document Library micro service ecosystem. Co-ordinates all the consumer micro services.

    mdcatapult/supervisor’s past year of commit activity
    Scala 0 Apache-2.0 0 0 0 Updated Jun 26, 2024
  • unarchiver Public

    Part of the Document Library micro service ecosystem. Uncompresses files that have been archived using zip, tar, gzip, 7zip & more

    mdcatapult/unarchiver’s past year of commit activity
    Scala 0 Apache-2.0 0 0 0 Updated Jun 26, 2024
  • scala-source-reader Public

    Utility methods to read text from input streams like zip files. Uses Apache Tika

    mdcatapult/scala-source-reader’s past year of commit activity
    Scala 0 Apache-2.0 0 0 0 Updated Jun 25, 2024
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