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@medvir

Institute of Medical Virology

The Institute of Medical Virology (IMV) is part of the medical faculty of the University of Zurich.

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  1. VirMet VirMet Public

    Set of tools for viral metagenomics.

    Python 13 5

  2. MinVar MinVar Public

    A tool to detect minority variants in HIV-1 and HCV populations

    Python 1 6

  3. SmaltAlign SmaltAlign Public

    Quick iterative alignment of reads against a given reference using smalt.

    Python 3 1

  4. EnvSeq EnvSeq Public

    Fully automated HIV-1 env plasmid sequencing analysis

    Python 1 1

  5. DMS DMS Public

    Infos and scripts for Data Management of Sequencing Data at the IMV

    Python 1 1

  6. virome-protocols virome-protocols Public

    version controlled protocols for virome sequencing

    1

Repositories

Showing 10 of 27 repositories
  • SmaltAlign Public

    Quick iterative alignment of reads against a given reference using smalt.

    medvir/SmaltAlign’s past year of commit activity
    Python 3 MIT 1 6 0 Updated Jul 29, 2024
  • DiaMet Public
    medvir/DiaMet’s past year of commit activity
    Python 0 0 0 0 Updated Jun 25, 2024
  • NanoporeMet Public
    medvir/NanoporeMet’s past year of commit activity
    Python 0 0 0 0 Updated Apr 26, 2024
  • Coverage Public
    medvir/Coverage’s past year of commit activity
    R 0 0 0 0 Updated Mar 12, 2024
  • DMS Public

    Infos and scripts for Data Management of Sequencing Data at the IMV

    medvir/DMS’s past year of commit activity
    Python 1 MIT 1 3 0 Updated Mar 12, 2024
  • ONT_amplicon Public

    create consensus sequence from Oxford Nanopore Technologies (ONT) amplicon sequencing

    medvir/ONT_amplicon’s past year of commit activity
    Python 0 0 0 0 Updated Feb 14, 2024
  • miseq-maintenance-status Public

    Provides an overview over the current maintenance status of an Illumina MiSeq sequencer

    medvir/miseq-maintenance-status’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Feb 13, 2024
  • VirMet Public

    Set of tools for viral metagenomics.

    medvir/VirMet’s past year of commit activity
    Python 13 5 6 0 Updated Nov 23, 2023
  • MinVar Public

    A tool to detect minority variants in HIV-1 and HCV populations

    medvir/MinVar’s past year of commit activity
    Python 1 6 8 0 Updated Jul 7, 2023
  • ptmismatch Public

    Examination of Primer-Template Mismatches

    medvir/ptmismatch’s past year of commit activity
    R 0 0 0 0 Updated Mar 6, 2023
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