better visualizations for debugging

mehta-lab · Oct 1, 2024 · 6ad3d02 · 6ad3d02
1 parent 93d5940
commit 6ad3d02
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Showing 2 changed files with 14 additions and 2 deletions.
diff --git a/examples/models/inplane_oriented_thick_pol3d_vector.py b/examples/models/inplane_oriented_thick_pol3d_vector.py
@@ -17,7 +17,7 @@
 index_of_refraction_media = 1.3
 numerical_aperture_illumination = 0.9
 numerical_aperture_detection = 1.2
-fourier_oversample_factor = 2
+fourier_oversample_factor = 1
 
 # Create a phantom
 fzyx_object = inplane_oriented_thick_pol3d_vector.generate_test_phantom(

diff --git a/waveorder/visuals/napari_visuals.py b/waveorder/visuals/napari_visuals.py
@@ -45,4 +45,16 @@ def add_transfer_function_to_viewer(
         zyx_shape[1] // 2,
         zyx_shape[2] // 2,
     )
-    viewer.dims.order = (2, 0, 1)
+
+    # Show XZ view by default, and only allow rolling between XY and XZ
+    viewer.dims.order = list(range(transfer_function.ndim - 3)) + [
+        transfer_function.ndim - 2,
+        transfer_function.ndim - 3,
+        transfer_function.ndim - 1,
+    ]
+    viewer.dims.rollable = (False,) * (transfer_function.ndim - 3) + (
+        True,
+        True,
+        False,
+    )
+