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@merenlab

Meren Lab

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  1. anvio anvio Public

    An analysis and visualization platform for 'omics data

    Python 413 142

  2. oligotyping oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    Python 39 22

  3. illumina-utils illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    Python 88 31

Repositories

Showing 10 of 20 repositories
  • anvio Public

    An analysis and visualization platform for 'omics data

    merenlab/anvio’s past year of commit activity
    Python 413 GPL-3.0 142 140 9 Updated Jul 10, 2024
  • merenlab.org Public

    Web content for Meren Lab

    merenlab/merenlab.org’s past year of commit activity
    Jupyter Notebook 11 MIT 31 2 1 Updated Jul 3, 2024
  • oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    merenlab/oligotyping’s past year of commit activity
    Python 39 GPL-2.0 22 5 0 Updated Jun 24, 2024
  • anvio.org Public

    The anvi'o community web page

    merenlab/anvio.org’s past year of commit activity
    HTML 4 11 2 1 Updated Jun 18, 2024
  • illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    merenlab/illumina-utils’s past year of commit activity
    Python 88 GPL-2.0 31 7 1 Updated Dec 16, 2023
  • world-map-r Public

    A simple script to display stuff on a world map with R and ggplot

    merenlab/world-map-r’s past year of commit activity
    R 17 GPL-3.0 4 1 0 Updated Sep 15, 2023
  • anviserver Public

    The code behind anvi'server

    merenlab/anviserver’s past year of commit activity
    HTML 5 AGPL-3.0 2 3 0 Updated May 9, 2023
  • CONCOCT Public Forked from BinPro/CONCOCT

    Clustering cONtigs with COverage and ComposiTion

    merenlab/CONCOCT’s past year of commit activity
    Python 0 48 0 0 Updated Mar 22, 2022
  • google-scholar-parser Public

    A set of Python utilities to parse Google Scholar data

    merenlab/google-scholar-parser’s past year of commit activity
    Python 3 GPL-3.0 0 5 0 Updated Jan 11, 2022
  • SAAV-structural-mapping Public

    Map single amino acid variants onto protein structures. Modus operandi: explore relationships between genetic variation and structural biology.

    merenlab/SAAV-structural-mapping’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Oct 12, 2021
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