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metagenlab

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  1. mummer2circos mummer2circos Public

    Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

    Python 101 24

  2. zDB zDB Public

    zDB: comparative bacterial genomics made easy

    HTML 32 4

  3. MeSS MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    Python 21 2

  4. assembly_finder assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    Python 13

  5. locus2genoplotr locus2genoplotr Public

    Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram

    Python 10 1

  6. zAMP zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    R 8 5

Repositories

Showing 10 of 30 repositories
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    metagenlab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,340 0 0 Updated Jan 9, 2025
  • MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    metagenlab/MeSS’s past year of commit activity
    Python 21 MIT 2 3 0 Updated Jan 7, 2025
  • assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    metagenlab/assembly_finder’s past year of commit activity
    Python 13 MIT 0 0 0 Updated Jan 7, 2025
  • zAMPExplorer Public

    zAMPExplorer: Shiny app for amplicon data visualization and stats

    metagenlab/zAMPExplorer’s past year of commit activity
    R 0 2 0 1 Updated Jan 6, 2025
  • PIPOVAP Public

    Lung and gut microbiota profiling in intensive care unit patients: a prospective pilot study

    metagenlab/PIPOVAP’s past year of commit activity
    0 MIT 0 0 0 Updated Jan 1, 2025
  • zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    metagenlab/zAMP’s past year of commit activity
    R 8 MIT 5 7 0 Updated Dec 18, 2024
  • metagenlab.r-universe.dev Public
    metagenlab/metagenlab.r-universe.dev’s past year of commit activity
    0 0 0 0 Updated Dec 17, 2024
  • benchmark-MeSS-CAMISIM Public

    Nextflow pipeline to benchmark MeSS and CAMISIM

    metagenlab/benchmark-MeSS-CAMISIM’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Dec 16, 2024
  • MeSS-figures Public

    Supplementary figures and scripts for the MeSS paper

    metagenlab/MeSS-figures’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 16, 2024
  • zDB Public

    zDB: comparative bacterial genomics made easy

    metagenlab/zDB’s past year of commit activity
    HTML 32 MIT 4 2 1 Updated Dec 4, 2024
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