Discussions

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  Can I use atlas even If I don't get good MAGs out of it?

  SilasK asked Dec 9, 2022 in Q&A · Answered

  

  

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  init ATLAS from contigs or MAGs as well

  Mechah started May 23, 2022 in Ideas

  

  

  

  

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  List all installed tools and their licenses

  AlexanderBartholomaeus started Nov 3, 2022 in General

  

  

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  BinGroup parameter

  slambrechts asked Mar 27, 2021 in Q&A · Answered

  

  

  

  

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  Bin Group Parameter - uncertain if working or how to initiate.

  Kurtj-hub asked Apr 21, 2022 in Q&A · Answered

  

  

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  Using atlas with assembled reads

  arjun-1985 asked Mar 25, 2022 in Q&A · Answered

  

  

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  duplicate reads

  INFINITY1993 asked Mar 10, 2022 in Q&A · Unanswered

  

  

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  Atlas and long reads

  SilasK started Feb 21, 2022 in Ideas

  

  

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  Working HPC - is there a docker version, singularity version

  Feature request

  soilmicrobiome started Jan 17, 2021 in Ideas

  

  

  

  

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  Annotation with custom database

  SilasK asked Nov 29, 2021 in Q&A · Unanswered

  

  

  

  

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  Quantification of genes present in the gene catalog among samples

  fconstancias started Jan 22, 2020 in Show and tell

  

  

  

  

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  Atlas and Eukaryotic reads

  Sofie8 started Jan 13, 2021 in Ideas

  

  

  

  

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  integration with single cell genomic data

  soilmicrobiome asked Nov 16, 2021 in Q&A · Unanswered

  

  

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  What new sub-workflows should be added to atlas?

  SilasK started Nov 10, 2021 in Ideas

  

  

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  Increased Compatibility with Shallow Metagenomics

  LeeBergstrand started Sep 30, 2021 in Ideas

  

  

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  📣

  Toiminnot

  SilasK announced Nov 1, 2021 in Announcements

  

  

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  Interesting paper about best practices for building gene catalogues.

  LeeBergstrand started Oct 22, 2021 in General

  

  

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  combining the ATLAS pipeline with different examples at different times

  omrctnr asked Aug 29, 2021 in Q&A · Answered

  

  

  

  

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  source code study

  mewu3 asked Aug 25, 2021 in Q&A · Answered

  

  

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  Use external assemblies

  SilasK asked Apr 9, 2021 in Q&A · Unanswered

  

  

  

  

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  Discussion: How to assemble complicated metagenome e.g. soil

  SilasK started Mar 29, 2021 in Ideas

  

  

  

  

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  Running atlas on a single machine

  botellaflotante asked Dec 10, 2020 in Q&A · Unanswered

  

  

  

  

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  refinning MAGs

  botellaflotante started Oct 22, 2020 in Ideas

  

  

  

  

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