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meyer-lab · Nov 5, 2024 · 865bf00 · 865bf00
1 parent 73801ef
commit 865bf00
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Showing 3 changed files with 18 additions and 9 deletions.
diff --git a/pf2/figures/figureA11.py b/pf2/figures/figureA11.py
@@ -24,8 +24,8 @@ def makeFigure():
     add_obs(X, "patient_category")
     combine_cell_types(X)
 
-    cmp1 = 2; cmp2 = 25
-    pos1 = True; pos2 = False
+    cmp1 = 8; cmp2 = 31
+    pos1 = False; pos2 = True
     threshold = 0.5
     X = add_obs_cmp_both_label(X, cmp1, cmp2, pos1, pos2, top_perc=threshold)
     X = add_obs_label(X, cmp1, cmp2)

diff --git a/pf2/figures/figureA14.py b/pf2/figures/figureA14.py
@@ -21,12 +21,12 @@ def makeFigure():
     add_obs(X, "patient_category")
     combine_cell_types(X)
 
-    cmp1 = 2; cmp2 = 25
-    pos1 = True; pos2 = False
+    cmp1 = 8; cmp2 = 31
+    pos1 = False; pos2 = True
     threshold = 0.5
     X = add_obs_cmp_both_label(X, cmp1, cmp2, pos1, pos2, top_perc=threshold)
-    print(np.count_nonzero(X.obs["Cmp2"]))
-    print(np.count_nonzero(X.obs["Cmp25"]))
+    print(np.count_nonzero(X.obs["Cmp8"]))
+    print(np.count_nonzero(X.obs["Cmp31"]))
     print(np.count_nonzero(X.obs["Both"]))
 
     X = add_obs_label(X, cmp1, cmp2)

diff --git a/pf2/figures/figureA15.py b/pf2/figures/figureA15.py
@@ -26,13 +26,22 @@ def makeFigure():
     add_obs(X, "patient_category")
     combine_cell_types(X)
 
-    cmp1 = 7; cmp2 = 10; cmp3 = 47
-    pos1 = True; pos2 = True; pos3 = True
+    cmp1 = 19; cmp2 = 26; cmp3 = 34
+    pos1 = False; pos2 = True; pos3 = True
     threshold = 0.5
     X = add_obs_cmp_both_label_three(X, cmp1, cmp2, cmp3, pos1, pos2, pos3, top_perc=threshold)
+
+    print(np.count_nonzero(X.obs["Cmp19"]))
+    print(np.count_nonzero(X.obs["Cmp26"]))
+    print(np.count_nonzero(X.obs["Cmp34"]))
+    print(np.count_nonzero(X.obs["Both"]))
+
     X = add_obs_label_three(X, cmp1, cmp2, cmp3)
 
-    colors = ["black", "fuchsia", "turquoise", "slateblue", "gainsboro"]
+    print(np.unique(X.obs["Label"], return_counts=True))
+
+    # colors = ["black", "fuchsia", "turquoise", "slateblue", "gainsboro"]
+    colors = ["fuchsia", "turquoise", "slateblue", "gainsboro"]
     pal = []
     for i in colors:
         pal.append(mcolors.CSS4_COLORS[i])