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v0.2.11
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@lpantano lpantano released this 13 Mar 21:22
· 266 commits to master since this release
v0.2.11
f7a7daa
  • Make GTF default output
  • Add function to get SNPs from Variant attribute
  • Improve PROST with last version output
  • Add isomiR-SEA compatibility
  • Fix sRNAbench exact match to NA in GFF
  • Change stats to use only 1 level isomiR classification
  • Add GFF to count matrix
  • Add read_attributes function
  • Improve isomiR reading from srnabench tool
  • Add PROST to supported tools
  • Remove deletion from addition isomiRs
  • Support for srnabench output
  • Fix bug mixing up source column
  • Support Seqbuster output
  • Functin to guess database used from GTF file through --mirna parameter
  • Adapt output format to https://github.com/miRTop/incubator/blob/master/format/definition.md
  • add function to check correct annotation
  • add test data for SAM parsing
  • add script to simulate isomiRs
  • parse indels from bam file
  • fix index BAM file command line
  • add function to accept indels and test unit
  • change header from subs -> mism to be compatible with isomiRs
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