This repository contains code to reproduce figure for our paper titled rfPhen2Gen: A machine learning based association study of brain imaging phenotypes to genotypes.
Results_21Feb2022.ipynb
is a Jupyter Notebook to reproduce figures in the paper.main_code.py
is a file that can be used to generate the.npz
file needed for the above notebooktop1000SNP_feats.csv
contains feature importances obtained using Random Forest Regression for top 1000 SNPs.
Note: The data used in the study cannot be made public as we don't have the permissions to do so. The data can be accessed from the Alzheimer’s Disease Neuroimaging Initiative website.