v11.0.0rc24

Full Changelog: v11.0.0rc23...v11.0.0rc24

regenerated schema derivatives

v11.0.0rc23

What's Changed

• Fix ID in functional_annotation_agg invalid example by @bmeluch in #254
• add NEON/NMDC instrument name/id mapping file by @sujaypatil96 in #257
• Change mass permissible value of calibration_target to mass_charge_ratio by @brynnz22 in #255
• Add Reference Calibration File permissible value to FileTypeEnum by @brynnz22 in #256
• inlined-as-list-updates by @turbomam in #269
• Use Berkeley API instead of Napa API by @turbomam in #261
• Update --selected-collections options to be consistent with Berkeley schema by @turbomam in #262
• Add a temporary NCBI prefix expansion by @turbomam in #260
• remove-jena-tdb-fuseki-gold-study-ids by @turbomam in #263
• Make rdf completes but only due to skipping workflows and calibrations by @turbomam in #271
• Remove has_peptide_quantifications values from proteomics records in workflow_execution_set (make-rdf workflow) by @turbomam in #270
• reason for skipping calibration_set by @turbomam in #272

Full Changelog: v11.0.0rc22...v11.0.0rc23

v11.0.0rc22

What's Changed

• Check that all invalid example files fail ONLY for the specified reason by @bmeluch in #220
• Refine the list of Instruments a migrator can map an instrument name to by @aclum in #247
• Remove parthood from DataGeneration by @aclum in #248
• Add migrator to check and add type slot to Protocol records by @kheal in #250
• Fix Metatranscriptome Expression class name by @aclum in #237
• Update InstrumentModelEnum by @aclum in #249
• Update migrator to populate type field on inline Protocol instances by @brynnz22 in #251
• Generate derivative files for release v11.0.0rc22 by @eecavanna in #253

Full Changelog: v11.0.0rc21...v11.0.0rc22

v11.0.0rc21

What's Changed

Routine back-merge of features from the production nmdc-schema into this development schema

• Merge nmdc-schema/main into copy of berkeley-schema-fy24/main (preparing for backmerge 2024-08-28) by @turbomam in #245
• staging of merging upstream into fork by @turbomam in #246
• DO NOT MERGE: Merge nmdc-schema/main into berkeley-schema-fy24/main (August 2022 "Backmerge") by @eecavanna in #239

Full Changelog: v11.0.0rc20...v11.0.0rc21

v11.0.0rc20

What's Changed

• Restore missing nmdc.py file, add a TSV file, and remove several files from .gitignore by @turbomam in #238

Last release with

• src/scripts/task_specific_code/metap_records_delete.py

Full Changelog: v11.0.0rc19...v11.0.0rc20

v11.0.0rc19

What's Changed

• Update PR template by @mslarae13 in #232
• Update migrator to treat metatranscriptome_expression_analysis_set as child of workflow_execution_set by @eecavanna in #228
• Deprecate EnvironmentalMaterialTerm, Pathway by @bmeluch in #222
• Regenerate accidentally-deleted JSON/YAML files in nmdc_schema directory by @turbomam in #234

Full Changelog: v11.0.0rc18...v11.0.0rc19

v11.0.0rc18

What's Changed

• Fix file name by @mslarae13 in #226
• Move PR template file by @mslarae13 in #227
• Merge upstream (nmdc-schema/main) into main (a.k.a. "Backmerge 2024-07-16") by @turbomam in #229
• Update range of was_generated_by slot by @aclum in #231
• Apply typecode fixes on IDs for ChromatographyConfiguration, StorageProcess, and MassSpectrometryConfiguration by @kheal in #225

Full Changelog: v11.0.0rc17...v11.0.0rc18

v11.0.0rc17

What's Changed

• Finalize names of Berkeley schema migrators by @eecavanna in #218
• Add PR template specific to the schema soft freeze by @mslarae13 in #217, @eecavanna in #219, and @turbomam in #221

Full Changelog: v11.0.0-rc.16...v11.0.0rc17

v11.0.0-rc.16

berkeley-schema-fy24 is frozen until further notice

• Development of PRs is still allowed.

• PRs can be brought up for team review in regularly scheduled Monday and Wednesday schema/metadata meetings if the PR does not

  • change the expressiveness of the schema
  • make previously valid data invalid
  • make previously invalid data valid

• Please ask the rollout task leaders for review in advance.

  • see the Berkeley-Schema-Refactor-RollOutNotes

• We anticipate merging this repo into nmdc-schema into this repo in October 2024, at which time the freeze will be lifted.

• What's Changed

• Start using delimiters around the rc portion of our release codes
• For freeze release v11.0.0rc15 by @turbomam in #212
• official merge of nmdc-schema frozen release by @turbomam in #213
• v11.0.0-rc.16 by @turbomam in #215

Full Changelog: v11.0.0rc14...v11.0.0-rc.16

v11.0.0rc14

What's Changed

• Update migrators to use correct collection name (mags_set) by @eecavanna in #211

Full Changelog: v11.0.0rc13...v11.0.0rc14