chore(maintenance): fixed doclint complaints

build.gradle

@@ -22,7 +22,7 @@ dependencies {
 
 jar {
     baseName = 'jDeployR'
-    version = '8.0.1'
+    version = '8.0.5'
 }
 
 javadoc {

examples/tutorial/build.gradle

@@ -28,7 +28,7 @@ dependencies {
 
 jar {
     baseName = 'client-tutorial'
-    version = '8.0.1'
+    version = '8.0.5'
 }
 
 task execute(type: JavaExec) {

src/main/java/com/revo/deployr/client/RClient.java

@@ -60,7 +60,7 @@ public RUser login(RAuthentication pAuthentication, boolean disableautosave)
     /**
      * Execute a single repository-managed script or a chain of
      * repository-managed scripts on an anonymous project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -86,7 +86,7 @@ public RScriptExecution executeScript(String scriptName,
     /**
      * Execute a single repository-managed script or a chain of
      * repository-managed scripts on an anonymous project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -112,7 +112,7 @@ public RScriptExecution executeScript(String scriptName,
     /**
      * Execute a single repository-managed script or a chain of repository-managed scripts
      * on an anonymous project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -134,7 +134,7 @@ public RScriptExecution executeScript(String scriptName,
     /**
      * Execute a single repository-managed script or a chain of repository-managed scripts
      * on an anonymous project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -157,12 +157,12 @@ public RScriptExecution executeScript(String scriptName,
     /**
      * Execute a single script found on a URL/path or a chain of scripts found on a set of URLs/paths
      * on an anonymous project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the externalSource parameter.
      * Chained execution executes each of the scripts identified on the call in a sequential
      * fashion on the R session, with execution occuring in the order specified on the parameter list.
-     * <p/>
+     * <p>
      * POWER_USER privileges are required for this call.
      *
      * @throws RClientException   if RClient fails to complete call.
@@ -179,14 +179,14 @@ public RScriptExecution executeExternal(String externalSource,
     /**
      * Execute a single repository-managed script or a chain of repository-managed scripts
      * on an anonymous project and render the outputs to a HTML page.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
      * fashion on the R session, with execution occuring in the order specified on the parameter list.
      *
      * @throws RClientException   if RClient fails to complete call.
-     * @throws RSecurityException if DeployR server security conditions not met on call.
+     * @throws RDataException if DeployR server security conditions not met on call.
      * @see RScriptExecution
      */
     public URL renderScript(String scriptName,

src/main/java/com/revo/deployr/client/RProject.java

@@ -113,10 +113,10 @@ public interface RProject extends
 
     /**
      * Recycle R session on project.
-     * <p/>
+     * <p>
      * Recycles the R session associated with the project by deleting all
      * R objects from the workspace and all files from the working directory.
-     * <p/>
+     * <p>
      * Recommended for temporary and blackbox projects. Recycle persistent projects
      * with caution as this operation can not be reversed.
      *
@@ -130,16 +130,16 @@ public RProjectDetails recycle()
 
     /**
      * Recycle R session on project.
-     * <p/>
+     * <p>
      * Recycles the R session associated with the project by deleting all
      * R objects from the workspace and all files from the working directory.
-     * <p/>
+     * <p>
      * Workspace objects and/or directory files can be preserved on a recycle
      * by enabling the respective parameter.
-     * <p/>
+     * <p>
      * Recycling a project is a convenient and efficient alternative to
      * starting over by closing an existing project and then creating a new project.
-     * <p/>
+     * <p>
      * Recommended for temporary and blackbox projects. Recycle persistent projects
      * with caution as this operation can not be reversed.
      *

src/main/java/com/revo/deployr/client/RRepositoryDirectory.java

@@ -38,7 +38,7 @@ public interface RRepositoryDirectory {
 
     /**
      * Update access-controls on files found in repository-managed user directory.
-     * <p/>
+     * <p>
      * If the files parameter is null, all files in the directory are updated.
      *
      * @throws RClientException   if RClient fails to complete call.
@@ -79,7 +79,7 @@ public RRepositoryDirectory rename(String newDirectoryName)
 
     /**
      * Download zip archive of files found in repository-managed user directory.
-     * <p/>
+     * <p>
      * If the files parameter is null, all files in the directory are downloaded.
      *
      * @throws RClientException   if RClient fails to complete call.

src/main/java/com/revo/deployr/client/about/RJobDetails.java

@@ -94,7 +94,7 @@ public RJobDetails(String id, String name, String descr, String status, String s
     /**
      * Code execution time (millis) for job. Measures the time taken to
      * execute the R code for the job.
-     * <p/>
+     * <p>
      * Can be used in conjunction with timeStart and timeTotal to profile
      * job runtime characteristics.
      */
@@ -104,7 +104,7 @@ public RJobDetails(String id, String name, String descr, String status, String s
      * Total time (millis) for job. Measures the time taken to prepare
      * R workspace and directory for job, execute code for the job and then
      * persist job artifacts as a persistent project.
-     * <p/>
+     * <p>
      * Can be used in conjunction with timeStart and timeCode to profile
      * job runtime characteristics.
      */

src/main/java/com/revo/deployr/client/about/RProjectExecutionDetails.java

@@ -62,7 +62,7 @@ public RProjectExecutionDetails(String id, String code, long timeStart, long tim
     /**
      * Code execution time (millis) for execution. Measures the time taken to
      * execute the R code for execution.
-     * <p/>
+     * <p>
      * Can be used in conjunction with timeStart and timeTotal to profile
      * execution runtime characteristics.
      */
@@ -72,7 +72,7 @@ public RProjectExecutionDetails(String id, String code, long timeStart, long tim
      * Total time (millis) for execution. Measures the time taken to prepare
      * R workspace and directory for execution, execute R code and then
      * persist execution artifacts to on project.
-     * <p/>
+     * <p>
      * Can be used in conjunction with timeStart and timeCode to profile
      * execution runtime characteristics.
      */

src/main/java/com/revo/deployr/client/api/RProjectExecuteCalls.java

@@ -51,7 +51,7 @@ public RProjectExecution executeCode(String code,
     /**
      * Execute a single repository-managed script or a chain of
      * repository-managed scripts on the current project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -74,7 +74,7 @@ public RProjectExecution executeScript(String scriptName,
     /**
      * Execute a single repository-managed script or a chain of
      * repository-managed scripts on the current project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -99,7 +99,7 @@ public RProjectExecution executeScript(String scriptName,
     /**
      * Execute a single repository-managed script or a chain of repository-managed scripts
      * on the current project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -120,7 +120,7 @@ public RProjectExecution executeScript(String scriptName,
     /**
      * Execute a single repository-managed script or a chain of repository-managed scripts
      * on the current project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -142,12 +142,12 @@ public RProjectExecution executeScript(String scriptName,
     /**
      * Execute a single script found on a URL/path or a chain of scripts found on a set of URLs/paths
      * on the current project.
-     * <p/>
+     * <p>
      * To execute a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the externalSource parameter.
      * Chained execution executes each of the scripts identified on the call in a sequential
      * fashion on the R session, with execution occuring in the order specified on the parameter list.
-     * <p/>
+     * <p>
      * POWER_USER privileges are required for this call.
      *
      * @throws RClientException   if RClient fails to complete call.

src/main/java/com/revo/deployr/client/api/RUserJobCalls.java

@@ -28,7 +28,7 @@ public interface RUserJobCalls {
     /**
      * List jobs.
      *
-     * @return List<RJob>
+     * @return List&lt;RJob&gt;
      * @throws RClientException   if RClient fails to complete call.
      * @throws RSecurityException if DeployR server security conditions not met on call.
      */
@@ -72,7 +72,7 @@ public RJob submitJobCode(String jobName,
      * Submit a single repository-managed script or a chain of
      * repository-managed scripts (found in the root directory)
      * to execute as a job.
-     * <p/>
+     * <p>
      * To submit a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -96,7 +96,7 @@ public RJob submitJobScript(String jobName,
     /**
      * Submit a single repository-managed script or a chain of
      * repository-managed scripts to execute as a job.
-     * <p/>
+     * <p>
      * To submit a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -121,7 +121,7 @@ public RJob submitJobScript(String jobName,
     /**
      * Submit a single repository-managed script or a chain of repository-managed scripts
      * to execute as a job.
-     * <p/>
+     * <p>
      * To submit a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -142,7 +142,7 @@ public RJob submitJobScript(String jobName,
     /**
      * Submit a single repository-managed script or a chain of repository-managed scripts
      * to execute as a job.
-     * <p/>
+     * <p>
      * To submit a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the scriptName, scriptAuthor and optionally scriptVersion parameters.
      * Chained execution executes each of the scripts identified on the call in a sequential
@@ -164,10 +164,10 @@ public RJob submitJobScript(String jobName,
     /**
      * Submit a single script found on a URL/path or a chain of scripts found on a set of URLs/paths
      * on the current project.
-     * <p/>
+     * <p>
      * To submit a chain of repository-managed scripts on this call provide a comma-separated
      * list of values on the externalSource parameter.
-     * <p/>
+     * <p>
      * POWER_USER privileges are required for this call.
      *
      * @return RJob

src/main/java/com/revo/deployr/client/api/RUserProjectCalls.java

@@ -64,7 +64,7 @@ public RProject createProject(ProjectCreationOptions options)
     /**
      * Create a pool of temporary projects.
      *
-     * @return List<RProject>
+     * @return List&lt;RProject&gt;
      * @throws RClientException   if RClient fails to complete call.
      * @throws RSecurityException if DeployR server security conditions not met on call.
      */

src/main/java/com/revo/deployr/client/api/RUserRepositoryDirectoryCalls.java

@@ -135,7 +135,7 @@ public RRepositoryDirectory createDirectory(String directory)
     /**
      * Copies one or more repository-managed files from a source
      * user directory to a destination user directory.
-     * <p/>
+     * <p>
      * If the files parameter is null, all files in the source
      * directory will be copied to the destination directory.
      *
@@ -150,7 +150,7 @@ public void copyDirectory(String sourceDirectory,
     /**
      * Moves one or more repository-managed files from a source
      * user directory to a destination user directory.
-     * <p/>
+     * <p>
      * If the files parameter is null, all files in the source
      * directory will be moved to the destination directory.
      *
@@ -166,7 +166,7 @@ public void moveDirectory(String sourceDirectory,
      * Uploads a set of files in a single zip archive into an existing
      * repository-managed user directory. The files are extracted from
      * the zip archive and placed file-by-file into the directory.
-     * <p/>
+     * <p>
      * The options.filename property is ignored on this call and
      * can be left blank.
      *

src/main/java/com/revo/deployr/client/api/RUserRepositoryScriptCalls.java

@@ -26,7 +26,7 @@ public interface RUserRepositoryScriptCalls {
     /**
      * List scripts in user' default repository.
      *
-     * @return List<RRepositoryFile>
+     * @return List&lt;RRepositoryFile&gt;
      * @throws RClientException   if RClient fails to complete call.
      * @throws RSecurityException if DeployR server security conditions not met on call.
      */
@@ -64,7 +64,7 @@ public List<RRepositoryFile> listScripts(String filename,
     /**
      * List scripts in user' external repository.
      *
-     * @return List<RRepositoryFile>
+     * @return List&lt;RRepositoryFile&gt;
      * @throws RClientException   if RClient fails to complete call.
      * @throws RSecurityException if DeployR server security conditions not met on call.
      */

src/main/java/com/revo/deployr/client/data/RBooleanMatrix.java

@@ -22,7 +22,7 @@ public interface RBooleanMatrix extends RData {
     /**
      * Gets the List-of-List of Boolean values for this RData.
      *
-     * @return List<List<Boolean>> value
+     * @return List&lt;List&lt;Boolean&gt;&gt; value
      * @see RData
      */
     public List<List<Boolean>> getValue();

src/main/java/com/revo/deployr/client/data/RBooleanVector.java

@@ -22,7 +22,7 @@ public interface RBooleanVector extends RData {
     /**
      * Gets the List of Boolean values for this RData.
      *
-     * @return List<Boolean> value
+     * @return List&lt;Boolean&gt; value
      * @see RData
      */
     public List<Boolean> getValue();

src/main/java/com/revo/deployr/client/data/RDataFrame.java

@@ -22,7 +22,7 @@ public interface RDataFrame extends RData {
     /**
      * Gets the List-of-RData value for this RData.
      *
-     * @return List<RData> value
+     * @return List&lt;RData&gt; value
      * @see RData
      */
     public List<RData> getValue();

src/main/java/com/revo/deployr/client/data/RDateVector.java

@@ -23,7 +23,7 @@ public interface RDateVector extends RData {
     /**
      * Gets the List of Date values for this RData.
      *
-     * @return List<Date> value
+     * @return List&lt;Date&gt; value
      * @see RData
      */
     public List<Date> getValue();

src/main/java/com/revo/deployr/client/data/RList.java

@@ -22,7 +22,7 @@ public interface RList extends RData {
     /**
      * Gets the List-of-RData value for this RData.
      *
-     * @return List<RData> value
+     * @return List&lt;RData&gt; value
      * @see RData
      */
     public List<RData> getValue();

src/main/java/com/revo/deployr/client/data/RNumericMatrix.java

@@ -22,7 +22,7 @@ public interface RNumericMatrix extends RData {
     /**
      * Gets the List-of-List of Double values for this RData.
      *
-     * @return List<List<Double>> value
+     * @return List&lt;List&lt;Double&gt;&gt; value
      * @see RData
      */
     public List<List<Double>> getValue();

src/main/java/com/revo/deployr/client/data/RNumericVector.java

@@ -22,7 +22,7 @@ public interface RNumericVector extends RData {
     /**
      * Gets the List of Double values for this RData.
      *
-     * @return List<Double> value
+     * @return List&lt;Double&gt; value
      * @see RData
      */
     public List<Double> getValue();