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An R library to manage day-to-day analysis of next generation sequencing (NGS) data by the Biomedical Sequencing Facility (BSF).

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BSF R Library

Introduction

The Biomedical Sequencing Facility (BSF) [1] is part of the joint genomics core facility of the
Medical University of Vienna [2] and the CeMM Research Center for Molecular Medicine [3] of the
Austrian Academy of Sciences [4]. The BSF is Austria’s first technology platform dedicated to
next generation sequencing in biomedicine and expected to play a catalyzing role for the
development of genomic medicine in Vienna and Austria.

This R library and the accompanying scripts are used for day-to-day analysis of
next-generation sequencing (NGS) data sets.

References

[1] http://www.biomedical-sequencing.at/
[2] http://www.meduniwien.ac.at/homepage/homepage/en/
[3] http://www.cemm.oeaw.ac.at/
[4] http://www.oeaw.ac.at/english/home.html

Additional Packages

In addition to the packages listed in the package DESCRIPTION,
the following are required for the exec scripts.

* caret
* ggpubr
* ggrepel
* pheatmap
* rjson
* Nozzle.R1

Licence

Copyright 2013 - 2022 Michael K. Schuster

Biomedical Sequencing Facility (BSF), part of the genomics core facility
of the Research Center for Molecular Medicine (CeMM) of the
Austrian Academy of Sciences and the Medical University of Vienna (MUW).


This file is part of BSF R.

BSF R is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

BSF R is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public License
along with BSF R.  If not, see <http://www.gnu.org/licenses/>.

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An R library to manage day-to-day analysis of next generation sequencing (NGS) data by the Biomedical Sequencing Facility (BSF).

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