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add production env
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aliaksei-chareshneu committed Jun 13, 2024
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name: cellstar-volume-server-PRODUCTION
channels:
- https://conda.anaconda.org/conda-forge
- https://repo.anaconda.com/pkgs/main
- https://repo.anaconda.com/pkgs/r
- https://repo.anaconda.com/pkgs/msys2
dependencies:
- python==3.10.0
- pip
- asgiref==3.5.0
- dask==2022.2.1
- fastapi==0.73.0
- gemmi==0.5.3
- matplotlib==3.5.1
- mrcfile==1.4.0
- numcodecs==0.9.1
- numpy==1.23.5
- pytest==7.1.2
- pytest-asyncio==0.18.3
- pytest-benchmark==3.4.1
- scikit-image==0.19.1
- scipy
- starfile
- starlette==0.17.1
- uvicorn==0.17.6
# with 0.59.1 produces warning
- numba==0.58.1
# there were issues with version of this package
# uncomment if without it it would not work
# - vtk==9.0.3
- zarr==2.11.1
- dask-image
- pydantic
- ome-zarr
- jupyterlab
- mkdocs

- pip:
# - -r requirements.txt
- git+https://github.com/molstar/ciftools-python.git@b074526a8b418bc68d83ae5556a627d2d6ceabdb#egg=ciftools
- sfftk==0.5.5.dev1
- sfftk-rw==0.7.1
- SimpleParse @ git+https://github.com/mcfletch/simpleparse.git@57c8d734bdc165581fbacfeecabe25a66c3452a4
- tensorstore==0.1.18
- killport
- Pillow
- typer==0.7.0
- autoflake
- isort
- black
- pyometiff
- nibabel
- seaborn
- -e ./preprocessor
- -e ./db
- -e ./query
- -e ./server
- h5py
- vedo
- mkdocs-material

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