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name: cellstar-volume-server-PRODUCTION | ||
channels: | ||
- https://conda.anaconda.org/conda-forge | ||
- https://repo.anaconda.com/pkgs/main | ||
- https://repo.anaconda.com/pkgs/r | ||
- https://repo.anaconda.com/pkgs/msys2 | ||
dependencies: | ||
- python==3.10.0 | ||
- pip | ||
- asgiref==3.5.0 | ||
- dask==2022.2.1 | ||
- fastapi==0.73.0 | ||
- gemmi==0.5.3 | ||
- matplotlib==3.5.1 | ||
- mrcfile==1.4.0 | ||
- numcodecs==0.9.1 | ||
- numpy==1.23.5 | ||
- pytest==7.1.2 | ||
- pytest-asyncio==0.18.3 | ||
- pytest-benchmark==3.4.1 | ||
- scikit-image==0.19.1 | ||
- scipy | ||
- starfile | ||
- starlette==0.17.1 | ||
- uvicorn==0.17.6 | ||
# with 0.59.1 produces warning | ||
- numba==0.58.1 | ||
# there were issues with version of this package | ||
# uncomment if without it it would not work | ||
# - vtk==9.0.3 | ||
- zarr==2.11.1 | ||
- dask-image | ||
- pydantic | ||
- ome-zarr | ||
- jupyterlab | ||
- mkdocs | ||
|
||
- pip: | ||
# - -r requirements.txt | ||
- git+https://github.com/molstar/ciftools-python.git@b074526a8b418bc68d83ae5556a627d2d6ceabdb#egg=ciftools | ||
- sfftk==0.5.5.dev1 | ||
- sfftk-rw==0.7.1 | ||
- SimpleParse @ git+https://github.com/mcfletch/simpleparse.git@57c8d734bdc165581fbacfeecabe25a66c3452a4 | ||
- tensorstore==0.1.18 | ||
- killport | ||
- Pillow | ||
- typer==0.7.0 | ||
- autoflake | ||
- isort | ||
- black | ||
- pyometiff | ||
- nibabel | ||
- seaborn | ||
- -e ./preprocessor | ||
- -e ./db | ||
- -e ./query | ||
- -e ./server | ||
- h5py | ||
- vedo | ||
- mkdocs-material |