Merge pull request #80 from monarch-initiative/dump-oaklib

use prompts for enrichment
monarch-initiative · Apr 29, 2023 · 81a243d · 81a243d
2 parents f78ea2e + 618bff6
commit 81a243d
Show file tree

Hide file tree

Showing 10 changed files with 11,202 additions and 5,331 deletions.
diff --git a/Makefile b/Makefile
@@ -130,6 +130,9 @@ analysis/enrichment/%-results-$(N).yaml: tests/input/genesets/%.yaml
 	$(RUN) ontogpt -vv eval-enrichment -n $(N) -U $< -o $@.tmp && mv $@.tmp $@
 
 analysis/enrichment-summary.yaml:
-	cat analysis/enrichment/*yaml > $@
+	cat analysis/enrichment/*-$(N)yaml > $@
+
+analysis/enrichment-summary-$(N).yaml:
+	cat analysis/enrichment/*-$(N).yaml > $@
 
 all_enrich: $(patsubst %, analysis/enrichment/%-results-$(N).yaml, $(GENE_SETS))