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The function that calculates the initial EIR doesn't appear to be quite right. I don't think it needs to be multiplied by psi. When these values are drawn in lines 135-140 of biting_process.R they get multiplied by psi in line 144. That means we're effectively multiplying these values by psi^2. I think we can correct this by adjusting the calculation thusly.
The two tests at the end would then need adjusting (one way or another) to reflect this change - which could probably use some improving.
I've drawn a couple of plots to show the difference this is trying to correct and that it doesn't change too much:
eir_calculation_comp_timesteps.pdf
eir_calculation_comp.pdf