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Remove severe immunity for P.v #319

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merged 1 commit into from
Oct 11, 2024

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RJSheppard
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Immunity to severe disease is not modelled in vivax. Switches are included to set and manipulate severe immunity variables. Relevant severe immunity parameters removed from parameters csv file.

@pwinskill
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/benchmark

@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_subpatent_duration_disease_progression branch from 4d1fb9a to 2fb8b20 Compare September 17, 2024 15:54
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_remove_severe_immunity branch from 3662dca to a06dc6c Compare September 17, 2024 16:37
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_subpatent_duration_disease_progression branch 2 times, most recently from 70062d5 to e3e404c Compare September 18, 2024 11:57
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_remove_severe_immunity branch from a06dc6c to 5ff8fc6 Compare September 18, 2024 11:58
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_subpatent_duration_disease_progression branch 2 times, most recently from 3d918c6 to 8b1c56b Compare September 20, 2024 16:15
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_remove_severe_immunity branch from 5ff8fc6 to e2580b4 Compare September 20, 2024 16:17
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_subpatent_duration_disease_progression branch 2 times, most recently from 3461513 to e25c01b Compare October 10, 2024 11:54
Base automatically changed from vivax_competing_hazards_main_subpatent_duration_disease_progression to dev October 10, 2024 13:27
…luded to set and use severe immunity variables. Relevant severe immunity parameters removed from the pv parameters in the parameters csv file.
@RJSheppard RJSheppard force-pushed the vivax_competing_hazards_main_remove_severe_immunity branch from e2580b4 to cd7ac4b Compare October 10, 2024 15:03
@RJSheppard
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/benchmark

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This is how benchmark results would change (along with a 95% confidence interval in relative change) if cd7ac4b is merged into dev:

  • ✔️large_population: 2.38m -> 2.37m [-1.2%, +0.19%]
  • ✔️small_population: 32.9s -> 32.9s [-2.34%, +1.93%]

Further explanation regarding interpretation and methodology can be found in the documentation.
Plots and raw data are available as artifacts of the workflow run.

@giovannic giovannic merged commit 8730f95 into dev Oct 11, 2024
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@giovannic giovannic deleted the vivax_competing_hazards_main_remove_severe_immunity branch October 11, 2024 08:58
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3 participants