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patch DP read anc_already_art #452

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Nov 19, 2024
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patch DP read anc_already_art #452

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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: naomi
Title: Naomi Model for Subnational HIV Estimates
Version: 2.10.0
Version: 2.10.1
Authors@R:
person(given = "Jeff",
family = "Eaton",
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5 changes: 5 additions & 0 deletions NEWS.md
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@@ -1,3 +1,8 @@
# naomi 2.10.1

* Patch error in reading `anc_already_art` from Spectrum PJNZ file (was errantly
reading number of women initiated ART <4 weeks before delivery).

# naomi 2.10.0

* Update Naomi example and test datasets to current example data for Malawi
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4 changes: 2 additions & 2 deletions R/inputs-spectrum.R
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Expand Up @@ -387,9 +387,9 @@ read_dp_anc_testing <- function(dp) {
## Note: these values start 1 column later than other arrays in the .DP file
## If value is 0, interpret as not entered (NA)
if (exists_dptag("<ARVRegimen MV2>")) {
anc_already_art <- dpsub("<ARVRegimen MV2>", 13, timedat.idx+1)
anc_already_art <- dpsub("<ARVRegimen MV2>", 11, timedat.idx+1)
} else if (exists_dptag("<ARVRegimen MV3>")) {
anc_already_art <- dpsub("<ARVRegimen MV3>", 13, timedat.idx+1)
anc_already_art <- dpsub("<ARVRegimen MV3>", 11, timedat.idx+1)
}
anc_already_art <- sapply(anc_already_art, as.integer)
anc_already_art[anc_already_art == 0] <- NA
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