v0.13

modified: Changes #modified: README modified: lib/Bio/ViennaNGS.pm modified: lib/Bio/ViennaNGS/AnnoC.pm modified: lib/Bio/ViennaNGS/Bam.pm modified: lib/Bio/ViennaNGS/BamStat.pm modified: lib/Bio/ViennaNGS/BamStatSummary.pm modified: lib/Bio/ViennaNGS/Expression.pm modified: lib/Bio/ViennaNGS/ExtFeature.pm modified: lib/Bio/ViennaNGS/Feature.pm modified: lib/Bio/ViennaNGS/FeatureChain.pm modified: lib/Bio/ViennaNGS/FeatureLine.pm modified: lib/Bio/ViennaNGS/MinimalFeature.pm modified: lib/Bio/ViennaNGS/SpliceJunc.pm modified: lib/Bio/ViennaNGS/Tutorial.pm modified: lib/Bio/ViennaNGS/UCSC.pm modified: lib/Bio/ViennaNGS/Util.pm
mtw · Feb 12, 2015 · 44b5f1d · 44b5f1d
1 parent e0704e8
commit 44b5f1d
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Showing 17 changed files with 35 additions and 34 deletions.
diff --git a/Changes b/Changes
@@ -123,5 +123,6 @@ Revision history for Perl extension ViennaNGS.
 	- added static templates for the Assembly and Track Hub generator
 	- updated POD and README 
 
-0.13
-	- fixed an issue in Bio::ViennaNGS::Feature
+0.13 Thu Feb 14 2015
+	- fixed an issue in Bio::ViennaNGS::FeatureChain
+	- updated POD
diff --git a/README b/README
@@ -1,5 +1,5 @@
-Bio::ViennaNGS 0.12
-==============
+Bio::ViennaNGS 0.13
+===================
 
 Bio::ViennaNGS is a distribution of Perl modules and utilities for
 building efficient Next-Generation Sequencing (NGS) analysis

diff --git a/lib/Bio/ViennaNGS.pm b/lib/Bio/ViennaNGS.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:10:36 mtw>
+# Last changed Time-stamp: <2015-02-12 21:01:32 mtw>
 
 package Bio::ViennaNGS;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 
 1;
 

diff --git a/lib/Bio/ViennaNGS/AnnoC.pm b/lib/Bio/ViennaNGS/AnnoC.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:13:20 mtw>
+# Last changed Time-stamp: <2015-02-12 21:02:51 mtw>
 
 package Bio::ViennaNGS::AnnoC;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use Bio::ViennaNGS::Util qw(sortbed);
 use Bio::Tools::GFF;
 use Path::Class;

diff --git a/lib/Bio/ViennaNGS/Bam.pm b/lib/Bio/ViennaNGS/Bam.pm
@@ -1,10 +1,10 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 17:03:30 mtw>
+# Last changed Time-stamp: <2015-02-12 21:03:03 mtw>
 
 package Bio::ViennaNGS::Bam;
 
 use Exporter;
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use strict;
 use warnings;
 use Bio::Perl 1.00690001;

diff --git a/lib/Bio/ViennaNGS/BamStat.pm b/lib/Bio/ViennaNGS/BamStat.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:16:17 mtw>
+# Last changed Time-stamp: <2015-02-12 21:03:14 mtw>
 
 package Bio::ViennaNGS::BamStat;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use Bio::DB::Sam 1.37;
 use Moose;
 use Carp;

diff --git a/lib/Bio/ViennaNGS/BamStatSummary.pm b/lib/Bio/ViennaNGS/BamStatSummary.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:32:19 mtw>
+# Last changed Time-stamp: <2015-02-12 22:40:00 mtw>
 
 package Bio::ViennaNGS::BamStatSummary;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use Moose;
 use Carp;
 use POSIX qw(floor);

diff --git a/lib/Bio/ViennaNGS/Expression.pm b/lib/Bio/ViennaNGS/Expression.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:52:47 mtw>
+# Last changed Time-stamp: <2015-02-12 21:00:27 mtw>
 
 package Bio::ViennaNGS::Expression;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use Moose;
 use Carp;
 use Data::Dumper;

diff --git a/lib/Bio/ViennaNGS/ExtFeature.pm b/lib/Bio/ViennaNGS/ExtFeature.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 15:28:53 mtw>
+# Last changed Time-stamp: <2015-02-12 21:03:27 mtw>
 
 package Bio::ViennaNGS::ExtFeature;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 
 use Moose;
 with 'MooseX::Clone';

diff --git a/lib/Bio/ViennaNGS/Feature.pm b/lib/Bio/ViennaNGS/Feature.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 15:26:21 mtw>
+# Last changed Time-stamp: <2015-02-12 21:03:54 mtw>
 
 package Bio::ViennaNGS::Feature;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 
 use Moose;
 with 'MooseX::Clone';

diff --git a/lib/Bio/ViennaNGS/FeatureChain.pm b/lib/Bio/ViennaNGS/FeatureChain.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-12 18:23:48 fall>
+# Last changed Time-stamp: <2015-02-12 21:04:05 mtw>
 
 package Bio::ViennaNGS::FeatureChain;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use Moose;
 with 'MooseX::Clone';
 use MooseX::InstanceTracking;

diff --git a/lib/Bio/ViennaNGS/FeatureLine.pm b/lib/Bio/ViennaNGS/FeatureLine.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:16:48 mtw>
+# Last changed Time-stamp: <2015-02-12 21:04:19 mtw>
 
 package Bio::ViennaNGS::FeatureLine;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use namespace::autoclean;
 use Moose;
 extends 'Bio::ViennaNGS::MinimalFeature';

diff --git a/lib/Bio/ViennaNGS/MinimalFeature.pm b/lib/Bio/ViennaNGS/MinimalFeature.pm
@@ -1,9 +1,9 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:15:20 mtw>
+# Last changed Time-stamp: <2015-02-12 22:40:13 mtw>
 
 package Bio::ViennaNGS::MinimalFeature;
 
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use namespace::autoclean;
 
 use Moose::Util::TypeConstraints;

diff --git a/lib/Bio/ViennaNGS/SpliceJunc.pm b/lib/Bio/ViennaNGS/SpliceJunc.pm
@@ -1,10 +1,10 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:51:26 mtw>
+# Last changed Time-stamp: <2015-02-12 22:40:27 mtw>
 
 package Bio::ViennaNGS::SpliceJunc;
 
 use Exporter;
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use strict;
 use warnings;
 use Data::Dumper;

diff --git a/lib/Bio/ViennaNGS/Tutorial.pm b/lib/Bio/ViennaNGS/Tutorial.pm
@@ -1,10 +1,10 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 16:09:57 mtw>
+# Last changed Time-stamp: <2015-02-12 22:40:39 mtw>
 
 package Bio::ViennaNGS::Tutorial;
 
 use Exporter;
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use strict;
 use warnings;
 

diff --git a/lib/Bio/ViennaNGS/UCSC.pm b/lib/Bio/ViennaNGS/UCSC.pm
@@ -1,10 +1,10 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 17:02:26 mtw>
+# Last changed Time-stamp: <2015-02-12 22:40:55 mtw>
 
 package Bio::ViennaNGS::UCSC;
 
 use Exporter;
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use strict;
 use warnings;
 use Template;

diff --git a/lib/Bio/ViennaNGS/Util.pm b/lib/Bio/ViennaNGS/Util.pm
@@ -1,11 +1,11 @@
 # -*-CPerl-*-
-# Last changed Time-stamp: <2015-02-11 17:06:51 mtw>
+# Last changed Time-stamp: <2015-02-12 22:41:09 mtw>
 
 
 package Bio::ViennaNGS::Util;
 
 use Exporter;
-use version; our $VERSION = qv('0.12');
+use version; our $VERSION = qv('0.13');
 use strict;
 use warnings;
 use Data::Dumper;