updated Makefile

mtw · Dec 10, 2014 · 9591195 · 9591195
1 parent 8e67691
commit 9591195
Showing 1 changed file with 36 additions and 33 deletions.
diff --git a/Makefile.PL b/Makefile.PL
@@ -7,40 +7,43 @@ use File::ShareDir::Install;
 
 install_share dist => 'share';
 
-my @scripts = qw (bam_split.pl bam_to_bigwig.pl bam_uniq.pl gff2bed.pl motiffinda.pl newUCSCdb.pl normalize_multicov.pl sj_visualizer.pl splice_site_summary.pl);
+my @scripts = qw (bam_split.pl bam_to_bigwig.pl bam_uniq.pl bed2bedGraph.pl extend_bed.pl gff2bed.pl kmer_analysis.pl MEME_XML_motif_extractor.pl motiffinda.pl newUCSCdb.pl normalize_multicov.pl sj_visualizer.pl splice_site_summary.pl trim_fastq.pl);
 WriteMakefile(
-    'NAME'            => 'Bio::ViennaNGS',
-    'AUTHOR'          => q{Michael T. Wolfinger},
-    'VERSION_FROM'    => 'lib/Bio/ViennaNGS.pm',
-    'ABSTRACT_FROM'   => 'lib/Bio/ViennaNGS.pm',
-    'LICENSE'         => 'perl',
-    'PREREQ_PM'       => {
-	"Getopt::Long"	        => '2.0',
-	"Bio::Root::Version" 	=> '1.00690001',
-	"Bio::DB::Sam"  	=> '1.39',
-	"Data::Dumper"          => '0',
-	"File::Basename" 	=> '0',
-	"File::Temp" 	        => '0',
-	"IPC::Cmd" 		=> '0',
-	"Path::Class" 	        => '0',
-	"Pod::Usage" 	        => '0',
-	"POSIX" 		=> '0',
-	"Carp" 		        => '0',
-	"Moose" 		=> '0',
-	"namespace::autoclean"  => '0',
-	"File::Share"           => '0',
-    },
-    'MIN_PERL_VERSION'          => '5.010',
-    'EXE_FILES'                 => [ map { "scripts/$_" } @scripts ],
-    'CONFIGURE_REQUIRES'        => {
-        'ExtUtils::MakeMaker' => 0,
-    },  
-    'BUILD_REQUIRES' => {
-        'Test::More' => 0,
-    },  
-    dist  => { COMPRESS => 'gzip -9f', SUFFIX => 'gz', },
-    clean => { FILES => 'Bio-ViennaNGS-*' },
-    );
+	      'NAME'            => 'Bio::ViennaNGS',
+	      'AUTHOR'          => q{Michael T. Wolfinger},
+	      'VERSION_FROM'    => 'lib/Bio/ViennaNGS.pm',
+	      'ABSTRACT_FROM'   => 'lib/Bio/ViennaNGS.pm',
+	      'LICENSE'         => 'perl',
+	      'PREREQ_PM'       => {
+				    "Getopt::Long"	        => '2.0',
+				    "Bio::Root::Version" 	=> '1.00690001',
+				    "Bio::DB::Sam"              => '1.39',
+				    "Bio::DB::Fasta"            => '0',
+				    "Bio::Tools::GFF"           => '0',
+				    "Data::Dumper"              => '0',
+				    "File::Basename"     	=> '0',
+				    "File::Temp" 	        => '0',
+				    "IPC::Cmd" 		        => '0',
+				    "Path::Class" 	        => '0',
+				    "Pod::Usage" 	        => '0',
+				    "POSIX" 		        => '0',
+				    "Carp" 		        => '0',
+				    "Moose"      		=> '0',
+				    "Moose::Util::TypeConstraints" => 0,
+				    "namespace::autoclean"  => '0',
+				    "File::Share"           => '0',
+				   },
+	      'MIN_PERL_VERSION'          => '5.010',
+	      'EXE_FILES'                 => [ map { "scripts/$_" } @scripts ],
+	      'CONFIGURE_REQUIRES'        => {
+					      'ExtUtils::MakeMaker' => 0,
+					     },  
+	      'BUILD_REQUIRES' => {
+				   'Test::More' => 0,
+				  },  
+	      dist  => { COMPRESS => 'gzip -9f', SUFFIX => 'gz', },
+	      clean => { FILES => 'Bio-ViennaNGS-*' },
+	     );
 
 #    ($] >= 5.005 ?
 #     (ABSTRACT_FROM  => 'lib/Bio/ViennaNGS.pm',