Bio::ViennaNGS v0.17

• added Bio::ViennaNGS::FeatureIO
• added Bio::ViennaNGS::Subtypes
• refactored Bio::ViennaNGS::Fasta to transparently coerce input data into a Bio::DB::Fasta object
• refactored executables in scripts/ folder to new Bio::ViennaNGS::Fasta interface
• changed output format in scripts/bed2nt2aa.pl to csv
• removed parse_bed6() and extend_chain() from Bio::ViennaNGS::Util (bed I/O is now available in Bio::ViennaNGS::FeatureIO and chain extension is available in bedtools)
• added uniquify_bam2() in Bio::ViennaNGS::Bam
• implemented correct handling of unmapped reads in Bio::ViennaNGS::Bam
• replace '~' with $HOME in mkdircheck() within Bio::ViennaNGS::Util
• fixed output path creation in rnaseq_peakfinder.pl, splice_site_summary.pl
• refactored scripts/bam_uniq.pl
• refactored scripts/bed2nt2aa.pl
• added scripts/fasta_subgrep.pl
• added scripts/fasta_multigrep.pl
• migrated scripts/MEME_xml_motif_extractor.pl to Bio-ViennaNGS-scripts-extra package on github
• updated POD
• removed Tutorial_pipeline{0,1,2}
• added unit tests