Revert error handling in construct.py

mira/dkg/construct.py

@@ -573,14 +573,7 @@ def construct(
  edge_names = {}
  for edge_prefix in DEFAULT_VOCABS:
  click.secho(f"Caching {manager.get_name(edge_prefix)}", fg="green", bold=True)
- try:
- parse_results = bioontologies.get_obograph_by_prefix(edge_prefix)
- except pydantic.error_wrappers.ValidationError:
- print(f"VALIDATE NODE GRAPH ERROR {edge_prefix}")
- continue
- if not parse_results.graph_document:
- print(f"EMPTY GRAPH {edge_prefix}")
- continue
+ parse_results = bioontologies.get_obograph_by_prefix(edge_prefix)
  for edge_graph in parse_results.graph_document.graphs:
  edge_graph = edge_graph.standardize()
  for edge_node in edge_graph.nodes:
@@ -1252,8 +1245,6 @@ def _get_edge_name(curie_: str, strict: bool = False) -> str:
  writer = csv.writer(file, delimiter="\t", quoting=csv.QUOTE_MINIMAL)
  writer.writerow(EDGE_HEADER)
  for prefix, edge_path in tqdm(sorted(use_case_paths.EDGES_PATHS.items()), desc="cat edges"):
- if not edge_path.is_file():
- continue
  with edge_path.open() as edge_file:
  reader = csv.reader(edge_file, delimiter="\t", quoting=csv.QUOTE_MINIMAL)
  _header = next(reader)