Use obograph.Xref instance and remove prefixes that don't have graph …

…data
nanglo123 · Sep 26, 2024 · d1980e2 · d1980e2
1 parent 1a33254
commit d1980e2
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/mira/dkg/construct.py b/mira/dkg/construct.py
@@ -985,6 +985,7 @@ def _get_edge_name(curie_: str, strict: bool = False) -> str:
 
  if parse_results.graph_document is None:
  click.secho(f"No graphs in {prefix}, skipping", fg="red")
+ use_case_paths.EDGES_PATHS.pop(prefix)
  continue
 
  _graphs = parse_results.graph_document.graphs
@@ -1104,7 +1105,7 @@ def _get_edge_name(curie_: str, strict: bool = False) -> str:
 
  if add_xref_edges:
  for xref in node.xrefs:
- if not isinstance(xref, Xref):
+ if not isinstance(xref, obograph.Xref):
  raise TypeError(f"Invalid type: {type(xref)}: {xref}")
  if not xref.value:
  continue