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@nanoporetech

Oxford Nanopore Technologies

Nanopores for single molecule (DNA/RNA, protein) analysis using the MinION, GridION and PromethION systems

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  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 448 53

  2. remora remora Public

    Methylation/modified base calling separated from basecalling.

    Python 149 18

  3. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 393 73

  4. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 121 15

  5. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 175 28

  6. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 381 118

Repositories

Showing 10 of 88 repositories
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 117 6 71 0 Updated Jul 11, 2024
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 121 15 21 2 Updated Jul 8, 2024
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 4 0 1 1 Updated Jul 1, 2024
  • rerio Public

    Research release basecalling models and configurations

    nanoporetech/rerio’s past year of commit activity
    Python 98 9 0 1 Updated Jun 18, 2024
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 448 53 132 (1 issue needs help) 1 Updated Jun 18, 2024
  • homebrew-tap Public

    Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

    nanoporetech/homebrew-tap’s past year of commit activity
    Ruby 5 0 0 0 Updated Jun 5, 2024
  • bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    nanoporetech/bonito’s past year of commit activity
    Python 381 118 90 (1 issue needs help) 2 Updated Jun 4, 2024
  • remora Public

    Methylation/modified base calling separated from basecalling.

    nanoporetech/remora’s past year of commit activity
    Python 149 18 12 1 Updated May 21, 2024
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 393 73 12 0 Updated May 20, 2024
  • sqlpad Public Forked from sqlpad/sqlpad

    Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowflake, BigQuery, SQLite, and more with ODBC

    nanoporetech/sqlpad’s past year of commit activity
    JavaScript 0 MIT 805 0 0 Updated May 14, 2024
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