Use CATMAID stack info to create xarray.DataArrays #104
Workflow file for this run
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name: Tests | |
on: [push, pull_request] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.python-version }}-${{ matrix.igraph }} | |
cancel-in-progress: true | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: | |
- '3.9' | |
- '3.10' | |
- '3.11' | |
igraph: ["igraph", "no-igraph"] | |
steps: | |
# # This cancels any such job that is still runnning | |
# - name: Cancel Previous Runs | |
# uses: styfle/cancel-workflow-action@0.6.0 | |
# with: | |
# access_token: ${{ github.token }} | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Linux libraries | |
run: | | |
sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \ | |
libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \ | |
libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev | |
- name: Install dependencies | |
run: | | |
pip install --upgrade pip | |
pip install pathos imageio | |
pip install pytest coveralls pytest-cov | |
- name: Install pymaid | |
run: pip install -e . | |
- run: pip install python-igraph | |
if: ${{ matrix.igraph == 'igraph' }} | |
- name: Report dependency versions | |
run: pip freeze -r requirements.txt | |
- name: Test | |
run: | | |
pytest --cov=./ --verbose | |
# coveralls |