4.1 - Full release

What's Changed

Made some mostly minor changes and several bugfixes. Please post any lingering issues after re-trying with NEAT 4.1

• updating test config by @joshfactorial in #79
• Updates to README by @joshfactorial in #81
• Update ChangeLog.md by @joshfactorial in #82
• Removing pybedtools dependency. by @keshav-gandhi in #84
• Vcf test by @joshfactorial in #86
• Updated descriptions of the commands and small edits! by @keshav-gandhi in #90
• Feature/fixing coverage by @joshfactorial in #95
• Update README.md by @joshfactorial in #96
• Added functionality for save trinucleotide by @keshav-gandhi in #92
• Found a merge conflict by @joshfactorial in #98
• Minor changes to output_file_writer by @keshav-gandhi in #99

Full Changelog: 4.0...4.1