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Update config.txt
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ndierckx authored Feb 8, 2017
1 parent e9872aa commit db9695c
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions config.txt
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ Read Length = 101
Type = chloro
Genome Range = 120000-200000
K-mer = 39
Insert Range = 1.5
Insert Range = 1.6
Insert Range strict = 1.2
Single/Paired = PE
Coverage Cut off = 1000
Expand All @@ -30,7 +30,7 @@ K-mer = (integer) This is the length of the overlap between match
If reads are shorter then 90 bp, this value should be decreased.
For reads longer then 101 bp, this value can be increased, but this is not necessary.
Insert Range = This variation on the insert size, could lower it when the coverage is very high or raise it when the
coverage is too low (Default: 1.5).
coverage is too low (Default: 1.6).
Insert Range strict = Strict variation to resolve repetitive regions (Default: 1.2).
Single/Paired = For the moment only paired end reads are supported.
Coverage Cut off = You can speed up the assembly by lowering the coverage cut off, standard it will use up to 1000 coverage
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