Long running time or bug?

[Zick007]

Hi,

I runned the command-line ./panX.py -fn /.data/MyData -sl T_species

Everything seemed good till step 6 I think... Now this step is running for 10 minutes. I only have 5 gbk files to compare in MyData. Is it normal? Should I let it continue or it's a bug?

I already checked and I've correctly installed all dependencies.

Also, I encountered the same problem when I launched the test.sh script...

Thank you!

[fmalmeida]

I have the same issue here. However the step is running for more than a day. I have even tried the parameter -nslbut it seems that the pipeline have ignored it.

[FilipeMatteoli]

Same here, 22 minutes running on 11 genomes using 14 threads. Maybe skipping step 6 is an option?

"====== time for step06:
22.01 minutes (1320.48 seconds)"