Skip to content

Issues: neherlab/pan-genome-analysis

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 17 Closed
33 Open 17 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

SF12_create_panGenome import ete_tree_split
#62 opened Mar 15, 2024 by delavegapab
IOError: [Errno 2] No such file or directory: '/home/a/Desktop/pan-genome-analysis/data/geneCluster/old_clusters_longSplit.txt'
#59 opened Mar 24, 2023 by faraziAnindo
1
[Errno 2] No such file or directory: -> tmp_core_diversity.txt
#58 opened Jan 20, 2023 by Calvin2077
2
panX output file created but it empty?
#57 opened Oct 3, 2022 by neelam19051
run-TestSet.sh: 25: ./panX.py: Permission denied
#56 opened Aug 19, 2022 by Dimpledavray287
1
error running the test set in the py3 branch
#55 opened Jul 22, 2022 by themudo
Step for generation of archive all_protein_seq.cpk
#52 opened May 11, 2022 by GitHublilo
Failed to export myPangenome's geneCluster.json (step 10)
#51 opened Apr 20, 2022 by jhcuarta
Roary output visualization using panX
#50 opened Feb 9, 2022 by leabact
ValueError
#49 opened Jan 13, 2022 by byeollee
Could this software uesd in animal?
#48 opened Oct 11, 2021 by ld9866
2
PanX visualization: No gene tree
#47 opened Jul 22, 2021 by MarietteEK
1
Issue with Step-09
#46 opened Jul 15, 2021 by raavan-deka
step 11: ValueError: need more than 1 value to unpack
#44 opened Mar 28, 2021 by NA1919
docs still state to install miniconda2
#41 opened Dec 9, 2020 by nick-youngblut
2
Running workflow for new data
#40 opened Nov 24, 2020 by smb20200615
Failed to read gbff files
#39 opened Aug 20, 2020 by oeco28
DIAMOND fails to produce pairwise alignments in Step 5
#38 opened Aug 5, 2020 by awalling
Biopython Parser Warning
#37 opened Jun 17, 2020 by kbojanic
xb_xref err
#36 opened May 22, 2020 by Bruce-BC
Long running time or bug?
#35 opened Apr 22, 2020 by Zick007
2
Failed to run Test
#34 opened Apr 15, 2020 by stheil15
3
How to prepare file "stran_list"(step 01) ?
#32 opened Nov 28, 2019 by fengshuo112
Running sh run-TestSet.sh cause error
#31 opened Nov 9, 2019 by OlegKotcar
3
Very diverse pangenome?
#30 opened Aug 1, 2019 by apredeus
1
ProTip! Mix and match filters to narrow down what you’re looking for.