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Could this software uesd in animal? #48

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ld9866 opened this issue Oct 11, 2021 · 2 comments
Open

Could this software uesd in animal? #48

ld9866 opened this issue Oct 11, 2021 · 2 comments

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@ld9866
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ld9866 commented Oct 11, 2021

Hi!
I saw from the introduction that this software is designed for use by prokaryotes. We now want to do a simple mammalian diploid for pan-genomics research. I don’t know if your software can achieve good results on animal pan-genomes.
Looking forward to hearing from you!

@wook2014
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I have read the thesis of pan-X published in 2018, it mentioned the comparison between pan-X and other workflows including orthoFinder orthoMCL Roary and panOCT. As far as I know, orthoFinder orthoMCL support the orthologues analysis without the limitation that must analyse with prokaryotes. So I think pan-X also support eukaryotes. But I can't figure out how to use a new species configuration.

@ld9866
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ld9866 commented Mar 22, 2022

Thank you!
I will test according to your suggestions and contact you if there are any questions.
Have a good day!

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