[REF] Move appzi and plausible to the gh pages build

[surchs]

• Closes Don't include plausible ID in docker build #399

Changes proposed in this pull request:

• move scripts into the GH build process
• This is the simples (aka dumbest) possible way to achieve this goal. A slightly smarter way would be to have a custom hook that can attach these scripts based on some env variables

NOTE: If this pull request is to be released, the release label must be applied once the review process is done to avoid the local and remote from going out of sync as a consequence of the bump version workflow run

Checklist

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• PR links to GitHub issue with mention Closes #XXXX
• Tests pass
• Checks pass
• If the PR changes the participant-level and/or the dataset-level result file, the query-tool-results files in the neurobagel_examples repo have been regenerated

For new features:

• Tests have been added

For bug fixes:

• There is at least one test that would fail under the original bug conditions.

Summary by Sourcery

Build:

• Move Appzi and Plausible scripts to the GitHub Pages build process by adding them during the deployment workflow.

[sourcery-ai]

Reviewer's Guide by Sourcery

This PR refactors how third-party scripts (Appzi and Plausible) are injected into the application by moving them from being statically defined in the HTML to being dynamically injected during the GitHub Pages build process. The implementation uses a simple sed command in the deployment workflow to replace a placeholder comment with the actual script tags.

No diagrams generated as the changes look simple and do not need a visual representation.

File-Level Changes

Change	Details	Files
Refactor third-party script injection mechanism	Remove static script tags from the base HTML file Add placeholder comment for script injection Move script tags to the end of the HTML file as a template Add new build step to inject scripts during deployment	index.html .github/workflows/deploy.yaml
Update GitHub Actions deployment workflow	Add new step to inject production scripts using sed command Include TODO comment about potential future improvements	.github/workflows/deploy.yaml

Assessment against linked issues

Issue	Objective	Addressed	Explanation
#399	Remove plausible from docker build process	✅
#399	Keep plausible in GitHub Pages build	✅

Possibly linked issues

• Don't include plausible ID in docker build #399: PR moves scripts to GH pages build, related to issue's deployment configuration.

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[sourcery-ai]

Hey @surchs - I've reviewed your changes - here's some feedback:

Overall Comments:

• The scripts are being injected after the closing tag which isn't valid HTML. Consider keeping them within the tag or at least within the HTML document structure.

Here's what I looked at during the review

• 🟡 General issues: 1 issue found
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟢 Documentation: all looks good

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[rmanaem]

🧑‍🍳

[neurobagel-bot]

🚀 PR was released in v0.8.0 🚀