Update step3_par.txt

scrnabox.slurm/hto/pars/step3_par.txt

@@ -10,7 +10,7 @@ par_save_metadata= "yes"
 # Make sure that no other files/objects are present in the directory besides Seurat RDS objects. 
 # Uncomment the line to activate the parameter
 ############################################################################
-#par_seurat_object= "/path/to/seurat/object"
+#par_seurat_object= "/path/to/directory/containing/seurat/object"
 
 
 ############################################################################
@@ -19,13 +19,21 @@ par_save_metadata= "yes"
 # L = lower bound threshold
 # R = upper bound threshold
 ############################################################################
+## minimum number of unique RNA transcripts
 par_nFeature_RNA_L= 50
+## maximum number of unique RNA transcripts
 par_nFeature_RNA_U= 6000
+## minimum number of total RNA transcripts
 par_nCount_RNA_L= 200
+## maximum number of total RNA transcripts
 par_nCount_RNA_U= 20000
+## Minimum mitochondrial RNA percentage
 par_mitochondria_percent_L= 0
+## Maximum mitochondrial RNA percentage
 par_mitochondria_percent_U= 50
+## Minimum ribosomal RNA percentage
 par_ribosomal_percent_L= 0
+## Maximum ribosomal RNA percentage
 par_ribosomal_percent_U= 100