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Update README.md
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fiorini9 authored Sep 13, 2023
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Expand Up @@ -79,7 +79,7 @@ For a description of the options for running `scrnabox.slurm` run the following
bash ./scrnabox.slurm/launch_scrnabox.sh -h
```

`scrnabox.slurm` requires that `R` and `cellranger` are also installed on the HPC system. In addition, the following R packages must be loaded: `'Seurat','ggplot2', 'dplyr', 'foreach', 'doParallel', 'Matrix', 'DoubletFinder','cowplot','clustree'`. Then users must install the `'scrnaboxR'` R package by running the following command:
`scrnabox.slurm` requires that `R` and `cellranger` are also installed on the HPC system. In addition, the following R packages must be loaded: `'Seurat','ggplot2', 'dplyr', 'foreach', 'doParallel', 'Matrix', 'DoubletFinder','cowplot','clustree'`. Then, install the `'scrnaboxR'` R package by running the following command:
```
devtools::install_github("neurobioinfo/scrnabox/scrnaboxR")
```
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